A0A7Y8H520 | AlphaKnot 2.0

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Information

Protein name	TonB_C domain-containing protein
Main knot	5₁ (93%)
Global pLDDT	85.79
Species	Ignavibacteriaceae bacterium
UniProt	A0A7Y8H520
Structure Prediction Model	AlphaFold v6: A0A7Y8H520
PDB structures	-
Structure in AlphaLasso	A0A7Y8H520: LS_2++C
Model length	116
AlphaFold deposition date	2026-06-01
AlphaKnot deposition date	2026-07-09

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					98.14	49-105	57	1-48, 106-116	48	11		Knot
					98.1	61-94	34	1-60, 95-116	60	22		Knot

MKKFRLVISKKILAPALFLILSNVSAAQTEEPFNKGDCTFNGFKLYGKIKFVDSFPDVTVQVVESFPDLKVKLVSSFPDDCGEWQIVDSFPETKIKIVESFPDLKIKFVESFPGIP

Comments

Categories voted by users:

Information

Protein name	TonB_C domain-containing protein
Main knot	5₁ (95%)
Global pLDDT	85.94
Species	Ignavibacteriaceae bacterium
UniProt	A0A7Y8H520
Structure Prediction Model	AlphaFold v4: A0A7Y8H520
PDB structures	-
Structure in AlphaLasso	A0A7Y8H520: LS_2++C
Model length	116
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					98.2	49-107	59	1-48, 108-116	48	9

MKKFRLVISKKILAPALFLILSNVSAAQTEEPFNKGDCTFNGFKLYGKIKFVDSFPDVTVQVVESFPDLKVKLVSSFPDDCGEWQIVDSFPETKIKIVESFPDLKIKFVESFPGIP

Comments

2023.12.19 11:36 Pol wrote:
Looks like a nice knot!

Categories voted by users:

Information

Protein name	TonB_C domain-containing protein
Main knot	0₁ (96%)
Species	Ignavibacteriaceae bacterium
UniProt	A0A7Y8H520
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Structure in AlphaLasso	A0A7Y8H520: LS_2++C
Model length	116
ESM generation time	2023-06-23: download the generated 3D model
AlphaKnot deposition date	2023-06-28

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MKKFRLVISKKILAPALFLILSNVSAAQTEEPFNKGDCTFNGFKLYGKIKFVDSFPDVTVQVVESFPDLKVKLVSSFPDDCGEWQIVDSFPETKIKIVESFPDLKIKFVESFPGIP

Comments

Domain	Bacteria
Family	Ignavibacteriaceae
Species (Full Name)	Ignavibacteriaceae bacterium
Gene	HXY49_06025
PDB structures (whole Protein)	-

A0A7Y8H520F1