A0A842TEN3 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Ribosomal RNA small subunit methyltransferase Nep1 (EC 2.1.1.-) (16S rRNA (pseudouridine-N1-)-methyltransferase Nep1)
Main knot	3₁ (85%)
Global pLDDT	91.84
Species	Candidatus Lokiarchaeota
UniProt	A0A842TEN3
Structure Prediction Model	AlphaFold v4: A0A842TEN3
PDB structures	-
Model length	246
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					89.0	157-207	51	1-156, 208-246	156	39

Model Sequence

MNLIHIILVESALEPIPKNLQKTPLIQKHARKFKKTPQEMILEVSLHHTIIKRLENHQKRGRPDIIHRCLLYALNSPLNKSKLLTIHVHTINNKIIEINPNVRVPRNYNRFIGLIEQLFKYKKIPPKIKSDQDSLLEIEDYSLKQLIDKINGSEILILNEYGKYIRCSEIFKDFNNFDTDRSYTVLIGGFSKGKLSNHILNLSNNIIKIDPEPLDSLIVLSKIINSYENTINLSDKRINQGLVKNV

Comments

ESM1

Categories voted by users:

Information

Protein name	Ribosomal RNA small subunit methyltransferase Nep1 (EC 2.1.1.-) (16S rRNA (pseudouridine-N1-)-methyltransferase Nep1)
Main knot	3₁ (85%)
Global pLDDT	90.14
Species	Candidatus Lokiarchaeota
UniProt	A0A842TEN3
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	246
ESM generation time	2023-06-24: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					97.6	157-207	51	1-156, 208-246	156	39

Model Sequence

Comments

Domain	Archaea
Family	unclassified Lokiarchaeota
Species (Full Name)	Candidatus Lokiarchaeota archaeon
Gene	nep1 GF329_01935
PFAM codes	PF03587
InterPro codes	IPR005304, IPR023503, IPR029026, IPR029028
PDB structures (whole Protein)	-

A0A842TEN3F1

AF4

Model Sequence

ESM1

Model Sequence