A0B5L3 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Ribosomal RNA small subunit methyltransferase Nep1 (EC 2.1.1.-) (16S rRNA (pseudouridine-N1-)-methyltransferase Nep1)
Main knot	3₁ (85%)
Global pLDDT	96.18
Species	Methanosaeta thermophila
UniProt	A0B5L3
Structure Prediction Model	AlphaFold v4: A0B5L3
PDB structures	-
Model length	226
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					95.7	151-196	46	1-150, 197-226	150	30

Model Sequence

MISMLLADSELELVPREIVGYPAVRLNARKRNKSPAKSILDASLHHSAMRALPMGDRRGRPDIVHVFLLVALESVLNRVGQLRVYIHTRNNEMITIDPTTRIPKNYPRFVGLMESLFEKGSVPEREPLIVMQRDRDIGACIGEIPHEKVILLSPKGRRVRLSDYVKECDNALFILGGFPKGEFISDVLSEADDTISIYEESLSVWTVASEILVNYENHVLEASAPS

Comments

ESM1

Categories voted by users:

Information

Protein name	Ribosomal RNA small subunit methyltransferase Nep1 (EC 2.1.1.-) (16S rRNA (pseudouridine-N1-)-methyltransferase Nep1)
Main knot	3₁ (86%)
Global pLDDT	94.7
Species	Methanosaeta thermophila
UniProt	A0B5L3
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	226
ESM generation time	2023-06-24: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					96.7	151-196	46	1-150, 197-226	150	30

Model Sequence

Comments

Domain	Archaea
Family	Methanotrichaceae
Species (Full Name)	Methanothrix thermoacetophila (strain DSM 6194 / JCM 14653 / NBRC 101360 / PT) (Methanosaeta thermophila)
Gene	nep1 Mthe_0188
PFAM codes	PF03587
InterPro codes	IPR005304, IPR023503, IPR029026, IPR029028
PDB structures (whole Protein)	-

A0B5L3F1

AF4

Model Sequence

ESM1

Model Sequence