A0Z085 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (EC 2.1.1.200) (tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase) (tRNA Cm32/Um32 methyltransferase)
Main knot	3₁ (85%)
Global pLDDT	78.53
Species	strain PCC 8106
UniProt	A0Z085
Structure Prediction Model	AlphaFold v4: A0Z085
PDB structures	-
Model length	317
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					89.8	83-133	51	1-82, 134-317	82	184

Model Sequence

MLDEALAQVRIILVEPAGALNVGSVARILKNMGLQQLVFVNPQCDPQCEEAQRMAVHAADLLETATITATLPEALTGCQRAIATTARKRSLETPLEHPRHGLGWLLETPSALIFGPEDRGLSNEELKYAQRFVRIPSSSAYPALNLAQAVAVCCYELSQLANVNPNISAEDLSASAASRPVSSPIQPASSVPLERLEGFYEHLETLLLNIGYLYPHTAASRMEKFRRLFNRADLSQTEVNMLRGILSQMEWALNSTQQSGTVDDTLIACNHAVTDVSCDSQSSALSDRVALTQETDSPSVEQPCRTMESESPDETSI

Comments

ESM1

Categories voted by users:

Information

Protein name	tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (EC 2.1.1.200) (tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase) (tRNA Cm32/Um32 methyltransferase)
Main knot	3₁ (90%)
Global pLDDT	85.34
Species	strain PCC 8106
UniProt	A0Z085
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	317
ESM generation time	2023-06-25: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					98.4	83-133	51	1-82, 134-317	82	184

Model Sequence

Comments

Domain	Bacteria
Family	Oscillatoriaceae
Species (Full Name)	Lyngbya sp. (strain PCC 8106) (Lyngbya aestuarii (strain CCY9616))
Gene	trmJ L8106_18057
PFAM codes	PF00588
InterPro codes	IPR001537, IPR004384, IPR029026, IPR029028
PDB structures (whole Protein)	-

A0Z085F1

AF4

Model Sequence

ESM1

Model Sequence