A9KJK0 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	TFIIB-type zinc ribbon-containing protein
Main knot	3₁ (94%)
Global pLDDT	80.81
Species	Clostridium phytofermentans
UniProt	A9KJK0
Structure Prediction Model	AlphaFold v4: A9KJK0
PDB structures	-
Model length	398
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					93.3	151-341	191	1-150, 342-398	150	57

Model Sequence

MHTIFSAGIRHVIILYRKRELLMVIQYKCPSCGADLTFDTTSKKLHCASCGSYYSIDSMPPPDIPLGESDDAPKVNPFGPQDIYEEASFDYKQKSEWQHKDFSSSKVSEYHCKNCGAVVITDKDTIATSCSFCGAAVVLSDRIEGQLEPSRIIPFKINRDQATKAFQKWCKKGLLTPTEFKHADRVKNITGIYIPFWLYDLNGIGDIDATCTKVRTYTRGDYIYTETQYYHVYRKVNLNYSNVPADASEKMNDNLMDRLEPYQNHDLITFEMPYLAGYLAEKYNFNADQIFPRARDKVGGFVDNYLRNTIHGYHSVITNRKDISIYKKNAYYTLLPVWMVCYDYKDSEHIFAMNGQTGKIVGKPPLSVPKMFAWFALIASLSFLIIKLLVVLNGGPWL

Comments

ESM1

Categories voted by users:

Information

Protein name	TFIIB-type zinc ribbon-containing protein
Main knot	3₁ (93%)
Global pLDDT	83.4
Species	Clostridium phytofermentans
UniProt	A9KJK0
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	398
ESM generation time	2023-06-25: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					81.6	151-339	189	1-150, 340-398	150	59

Model Sequence

Comments

Domain	Bacteria
Family	Lachnospiraceae
Species (Full Name)	Lachnoclostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) (Clostridium phytofermentans)
Gene	Cphy_3673
PDB structures (whole Protein)	-

A9KJK0F1

AF4

Model Sequence

ESM1

Model Sequence