B0K507 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Plasmid pRiA4b ORF-3 family protein
Main knot	3₁ (49%)
Global pLDDT	92.62
Species	strain X514
UniProt	B0K507
Structure Prediction Model	AlphaFold v4: B0K507
PDB structures	-
Structure in AlphaLasso	B0K507: L_+1N
Model length	383
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					94.0	2-101	100	1-1, 102-383	1	282

Model Sequence

MLIQCTKKLLDVIERKPVSYEEENLLFCWHANLITLNRRKTIVLVNDKNRYVVVLYGLKAKDFKRLDEAILNAIRLTLLDECIDEEIVEEYVRQSEEILYGKTKNSSYVGKMNAACNVVYLYEDLLLDNTVYQTFVSKVASRYWVGKQEEGYISPSKEMFKDLEAFAGRPIFKCKAIELKVTLEMENHNIWRRLVVPINSTFTQLHKVLQAAFGWLDYHLHEFFIYGDEMQDISFINHPSYNKAGYKPVINLVSDEEAFDYPNDDGIEMRFEKGIKLSEYIPKYKRLLYVYDFGDNWRHYIEVEKVIDDYDKNYAICVDGEGNAPPEDVGGKFGYDKFLEIISDKNNPEYEGTLVWGEYQGYKDFNISEVNKNIKFVYDSFLL

Comments

ESM1

Categories voted by users:

Information

Protein name	Plasmid pRiA4b ORF-3 family protein
Main knot	3₁ (44%)
Global pLDDT	89.79
Species	strain X514
UniProt	B0K507
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Structure in AlphaLasso	B0K507: L_+1N
Model length	383
ESM generation time	2023-06-22: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					92.7	2-101	100	1-1, 102-383	1	282

Model Sequence

Comments

Domain	Bacteria
Family	Thermoanaerobacteraceae
Species (Full Name)	Thermoanaerobacter sp. (strain X514)
Gene	Teth514_2272
PFAM codes	PF07929
InterPro codes	IPR012912, IPR024047
PDB structures (whole Protein)	-

B0K507F1

AF4

Model Sequence

ESM1

Model Sequence