C4K8Z2 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.228) (M1G-methyltransferase) (tRNA [GM37] methyltransferase)
Main knot	3₁ (91%)
Global pLDDT	92.42
Species	strain 5AT
UniProt	C4K8Z2
Structure Prediction Model	AlphaFold v4: C4K8Z2
PDB structures	-
Model length	266
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					97.3	101-146	46	1-100, 147-266	100	120

Model Sequence

MISTELQSVSENKLWIGVISLFPEMFRAITDYGVTGRAIKKGIIHIQYWNPRHFAHNFHASVDDRPYGGGPGMLMMVQPLRDAIHSAKKEAIHTGKKKVIYLSPQGKKLDQQAVRQLALYKNMILVCGRYEGIDERLIDTEIDEEWSVGDYVLSGGELPAMTLIDAVSRCIMGVLGHEASANEDSFSEGLLDCPHYTRPENVDGMEVPNVLLLGNHAKIRLWRLKQSLGRTWLRRPELLAKLTLTDEQILLLDEFQKEQKLNDNHR

Comments

ESM1

Categories voted by users:

Information

Protein name	tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.228) (M1G-methyltransferase) (tRNA [GM37] methyltransferase)
Main knot	3₁ (92%)
Global pLDDT	93.48
Species	strain 5AT
UniProt	C4K8Z2
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	266
ESM generation time	2023-06-22: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					96.8	101-146	46	1-100, 147-266	100	120

Model Sequence

Comments

Domain	Bacteria
Family	Enterobacteriaceae
Species (Full Name)	Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT)
Gene	trmD HDEF_2324
PFAM codes	PF01746
InterPro codes	IPR002649, IPR016009, IPR023148, IPR029026, IPR029028
PDB structures (whole Protein)	-

C4K8Z2F1

AF4

Model Sequence

ESM1

Model Sequence