C9E4S5 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Plasmid-related protein
Main knot	3₁ (74%)
Global pLDDT	90.04
Species	Vibrio cholerae
UniProt	C9E4S5
Structure Prediction Model	AlphaFold v4: C9E4S5
PDB structures	-
Model length	200
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					95.3	20-120	101	1-19, 121-200	19	80

Model Sequence

MAQAKPNYSKPIFEQSFTINSLQAQRVVDRVFRRTVSALYGIDVILRIIGDDNEIDEVEQIISQLIEDCAKAVDNEQARLDKLMETNGIDEVPDYTDPITFNAKISSPQVGQFVGLVRKLDALMISMDTLWLSSVLSNKQRVDGNYAWQQRIIKLARRIIDIEIRARKSAQAKGKEAEVEQAVPSTDDDITEKETDTPAN

Comments

ESM1

Categories voted by users:

Information

Protein name	Plasmid-related protein
Main knot	3₁ (88%)
Global pLDDT	90.96
Species	Vibrio cholerae
UniProt	C9E4S5
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	200
ESM generation time	2023-06-23: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					77.8	20-120	101	1-19, 121-200	19	80

Model Sequence

Comments

Domain	Bacteria
Species (Full Name)	Vibrio cholerae Ban5
Gene	ICEVCHBAN5_0067
PDB structures (whole Protein)	-

C9E4S5F1

AF4

Model Sequence

ESM1

Model Sequence