D1MPX8 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Spore germination protein GerLB
Main knot	3₁ (43%)
Global pLDDT	90.4
Species	Bacillus anthracis
UniProt	D1MPX8
Structure Prediction Model	AlphaFold v4: D1MPX8
PDB structures	-
Model length	343
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					91.2	14-259	246	1-13, 260-343	13	84

Model Sequence

MPRDIANQTLFSDGWIILLLGGLICAVLGWFVTRVAILFPKQNFVQYTSAHLTKPVAYTISMVLVLTFAALTAYESRMIAIISQTYLFSETPVQLLSFFFLLVVIYGIAGSRAALLRLNVMFLPIVLIAIVLLSLLNINLMEINNLFPAFQTEVSQYAVGVKNSIFTFIGFEVALFYAVLLNDKTAKKAPMAVAKAVIVNVLSYILIYVTCISVFTYMTTRGLTYPTIELGKEIEIGGGFLERFDAIFFTTWIITIYNTTAMYYDVASLLFCAMFPKVKKHIFIFGSAPLIFMLNMLPGNLDTLSSYGTYLAWIDMGFVVLAPLLVFIVYKIKRRNGRNETPS

Comments

ESM1

Categories voted by users:

Information

Protein name	Spore germination protein GerLB
Main knot	3₁ (40%)
Global pLDDT	94.53
Species	Bacillus anthracis
UniProt	D1MPX8
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	343
ESM generation time	2023-06-25: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					92.6	2-259	258	1-1, 260-343	1	84

Model Sequence

Comments

Domain	Bacteria
Family	Bacillaceae
Species (Full Name)	Bacillus anthracis
Gene	gerLB GBAA_0710
PFAM codes	PF03845
InterPro codes	IPR004761
PDB structures (whole Protein)	-

D1MPX8F1

AF4

Model Sequence

ESM1

Model Sequence