D2REF3F1

tRNA (pseudouridine(54)-N(1))-methyltransferase (EC 2.1.1.257)
AF4
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Information
Protein name
tRNA (pseudouridine(54)-N(1))-methyltransferase (EC 2.1.1.257)
Main knot
31 (69%)
Global pLDDT
97.74
Species
Archaeoglobus profundus
UniProt
Structure Prediction Model
AlphaFold v4:  D2REF3
PDB structures
-
Structure in AlphaLasso
  D2REF3: L+1N
Model length
194
AlphaFold deposition date
2022-06-01
AlphaKnot deposition date
2023-01-27
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
96.6 127-172 46 1-126, 173-194 126 22
Model Sequence
MRGFLIVGNKAVTKPFSLKDLAGSAGRMDIICRCIAQALFISHGIRRDVEVYVLLLGEPDPPKALKIVGSEVRYMAPDERNIGGIIRKALSLKVDYSWKRSTPGVYIARKNLIDLLEELSKKYNVVYLREDGVDIRDVACRLENPLFVLGDHIGLREEDEKTVMKYAKIVVSVSKLSLQADQCIVIVHYELDRC
Comments
ESM1
Categories voted by users:
Information
Protein name
tRNA (pseudouridine(54)-N(1))-methyltransferase (EC 2.1.1.257)
Main knot
31 (71%)
Global pLDDT
88.88
Species
Archaeoglobus profundus
UniProt
Structure Prediction Model
PDB structures
-
Structure in AlphaLasso
  D2REF3: L+1N
Model length
194
ESM generation time
AlphaKnot deposition date
2023-06-28
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
89.3 127-172 46 1-126, 173-194 126 22
Model Sequence
MRGFLIVGNKAVTKPFSLKDLAGSAGRMDIICRCIAQALFISHGIRRDVEVYVLLLGEPDPPKALKIVGSEVRYMAPDERNIGGIIRKALSLKVDYSWKRSTPGVYIARKNLIDLLEELSKKYNVVYLREDGVDIRDVACRLENPLFVLGDHIGLREEDEKTVMKYAKIVVSVSKLSLQADQCIVIVHYELDRC
Comments
Domain Archaea
Family Archaeoglobaceae
Species (Full Name) Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18)
Gene trmY Arcpr_1449
PFAM codes  PF04013
InterPro codes  IPR007158,  IPR029026,  IPR029028
PDB structures (whole Protein) -
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