D3ZDX5F1

Plexin B1
AF4
Categories voted by users:
Information
Protein name
Plexin B1
Main knot
52 (67%)
Global pLDDT
75.29
Species
Rat
UniProt
Structure Prediction Model
AlphaFold v4:  D3ZDX5
PDB structures
-
Structure in AlphaLasso
  D3ZDX5: LLS-6,2--  L0
Model length
2121
AlphaFold deposition date
2022-06-01
AlphaKnot deposition date
2023-01-27
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
74.0 129-2055 1927 1-128, 2056-2121 128 66
Model Sequence
MSVLGPVLLQVFWAGCVLTLQFPVPAAFTANGTHLQHLARDPTTGTLYVGATNFLFQLSPGLQLEAVVSTGPVNDSRDCLPPVIPDECPQAQPTNNPNQLLLVSPEALVVCGSVHQGICELRSLGQIRQLLLRPERPGDTQYVAANDPAVSTVGLVAQGLAGEPLLFVGRGYTSRGVGGGIPPITTRALRPPDPQAAFSYEETAKLAVGRLSEYSHHFVSAFVRGTSAYFLFLRRDLKAPSRAFRAYVSRVCLQDQHYYSYVELPLACQGGRYGLIQAAAVATSKEAARGEILFAAFSSVAPPTVDWPLSASTGASGTSVLCAFPLDEVDQLANDTRDACYTREGRAENGTKVADIAYDVLSDCAQLPVDTPDAFPCGSDHTPSPMVSCVPLEATPILELPGVQLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGRSAAPYSKQSIQPGSAVNRDLTFDGTFEHLYVATQTTLVKVPVAPCAQHLDCDSCLAHRDPYCGWCVLLGRCSRRSECSRAQGPEQWLWSFQSELGCLRVVAVSPANISRGERREVFLSVPGLPSLWPEESYFCYFGDQQSPALLTSSGVMCPSPDPSEAPVLQRGADHISVNVELRFGAVVIANTSLSFYDCMAVTEFFPSAPCRACVSSRWGCNWCVWQQLCTHKASCDSGPMVASQQSPLLPLIPPARDVLTPFPLTVPRATATPTPNTFPAEPRAPSIASDVLPGAKPSRLSLWGPWAGPGPILSPTSTESPLHEKPLPPEPPTTPGTTVPAPADLGPLTTPEDLLASYPFPSDAAAVSPTEPGPETLPSMVALDQPPGTAPATLFPGATGSMKPVLDWLTKGGGELLEAEEWMGGDTPAFSTSTLLSGDGDSAEHEGPSAPLILLSSLDYQYDTPGLWELGEVNQRVSSCPCVENVQGSLLIPVHVKREVQLRGRNLWLFQDGPRSSECVLVLEGLEVAVEAQVECEPPPDTWCHIKCQQHQFSYEASKPELQVGLFLRWAGGLRVDSADGLHVVLYDCSVGHGDCSRCQTAMPQYDCVWCEGEHPRCVAREACNEAETVATQCPAPLIHSVEPLTGPIDGGTRVTIRGSNLGQHVQDVLGMVRVAGVPCAVDVGEYDVSSSLVCITGSSGEEVTGAVAVEVPGRGHGVSEFSFAYQDPKVLSIFPVHGPRAGGTHLTLHGSKLLTGRLEDIRVVVGDQPCHLLLEQQSEQLHCETSPNPVPAELPVMVWFGATERRLQHSQFKYTADPNITSVGPAKSFFSGGREIWVRGQNLDVVQMPRIRVTVIPRVPQHGQGLGQKHHVVPEKIEEPCLVNSSHLIMCRSPALPGPPQDPWVQVEFILDNMVFDFATLSPTPFSYEADPTLRSLNPEDPTTPFRHKPGSVFSVEGENLDLAMSKEEVVAMIGDGPCVVKTLTRHHLYCEPPVEQPLPHHHALREAPDALPEFTVQMGNLRFSLGHVQYDGESPVAFPVAAQVGLGVGVSLLALGVIVIVLIYRRKSKQALRDYKKVQIQLENLESSVRDRCKKEFTDLMTEMTDLTSDLLGSGIPFLDYKVYAERVFFPGHQESPLHRDLGVPDSRRPTVEQGLGQLSNLLNSKLFLTKFIHTLESQRTFSARDRAYVASLLTVALHGKLEYFTDILRTLLSDLVAQCVAKNPKLMLRRTETVVEKLLTNWMSICLYTFVRDSVGEPLYMLFRGIKHQVDKGPVDSVTGKAKYTLNDNRLLREDVEYRPLTLNALLAVGPGAGEAQSVPVKVLDCDTISQAKEKMLDQLYKGVPLAQRPDSRTLDVEWRSGVAGHLILSDEDVTSELEGLWRRLNTLQHYKVPDGATVALVPCLTKHILRENQDYVPGERTPMLEDVDEGGIRPWHLVKPSDEPEPPRPRRGSLRGGERERAKAIPEIYLTRLLSMKGTLQKFVDDLFQVILSTSRPVPLAVKYFFDLLDEQAQQHGISDQDTIHIWKTNSLPLRFWINIIKNPQFVFDVQTSDNMDAVLLVIAQTFMDACTLADHKLGRDSPINKLLYARDIPRYKQMVERYYADIRQTVPASDQEMNSVLAELSRNCSADLGARVALHELYKYINKYYDQIITALEEDGTAQKMQLGYRLQQIAAAVENKVTDL
Comments
AF1-Artifact
Categories voted by users:
Information
Protein name
Plexin B1
Main knot
52 (67%)
Knot fingerprint
K 52(x5) 41(x3) 31(x3)
Global pLDDT
75.29
Species
Rat
UniProt
Structure Prediction Model
AlphaFold v1:  D3ZDX5
PDB structures
-
Structure in AlphaLasso
  D3ZDX5: LLS-6,2--  L0
Model length
2121
AlphaFold deposition date
2021-07-01
AlphaKnot deposition date
2021-12-18
Knot map

Knot cutoff: 48%


Help Knotting data interpretation
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
77.4 169-2079 1911 1-168, 2080-2121 168 42 Knot
66.2 183-899 717 1-182, 900-2121 182 1222 Slipknot
65.1 291-1013 723 1-290, 1014-2121 290 1108 Slipknot
Model Sequence
MSVLGPVLLQVFWAGCVLTLQFPVPAAFTANGTHLQHLARDPTTGTLYVGATNFLFQLSPGLQLEAVVSTGPVNDSRDCLPPVIPDECPQAQPTNNPNQLLLVSPEALVVCGSVHQGICELRSLGQIRQLLLRPERPGDTQYVAANDPAVSTVGLVAQGLAGEPLLFVGRGYTSRGVGGGIPPITTRALRPPDPQAAFSYEETAKLAVGRLSEYSHHFVSAFVRGTSAYFLFLRRDLKAPSRAFRAYVSRVCLQDQHYYSYVELPLACQGGRYGLIQAAAVATSKEAARGEILFAAFSSVAPPTVDWPLSASTGASGTSVLCAFPLDEVDQLANDTRDACYTREGRAENGTKVADIAYDVLSDCAQLPVDTPDAFPCGSDHTPSPMVSCVPLEATPILELPGVQLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGRSAAPYSKQSIQPGSAVNRDLTFDGTFEHLYVATQTTLVKVPVAPCAQHLDCDSCLAHRDPYCGWCVLLGRCSRRSECSRAQGPEQWLWSFQSELGCLRVVAVSPANISRGERREVFLSVPGLPSLWPEESYFCYFGDQQSPALLTSSGVMCPSPDPSEAPVLQRGADHISVNVELRFGAVVIANTSLSFYDCMAVTEFFPSAPCRACVSSRWGCNWCVWQQLCTHKASCDSGPMVASQQSPLLPLIPPARDVLTPFPLTVPRATATPTPNTFPAEPRAPSIASDVLPGAKPSRLSLWGPWAGPGPILSPTSTESPLHEKPLPPEPPTTPGTTVPAPADLGPLTTPEDLLASYPFPSDAAAVSPTEPGPETLPSMVALDQPPGTAPATLFPGATGSMKPVLDWLTKGGGELLEAEEWMGGDTPAFSTSTLLSGDGDSAEHEGPSAPLILLSSLDYQYDTPGLWELGEVNQRVSSCPCVENVQGSLLIPVHVKREVQLRGRNLWLFQDGPRSSECVLVLEGLEVAVEAQVECEPPPDTWCHIKCQQHQFSYEASKPELQVGLFLRWAGGLRVDSADGLHVVLYDCSVGHGDCSRCQTAMPQYDCVWCEGEHPRCVAREACNEAETVATQCPAPLIHSVEPLTGPIDGGTRVTIRGSNLGQHVQDVLGMVRVAGVPCAVDVGEYDVSSSLVCITGSSGEEVTGAVAVEVPGRGHGVSEFSFAYQDPKVLSIFPVHGPRAGGTHLTLHGSKLLTGRLEDIRVVVGDQPCHLLLEQQSEQLHCETSPNPVPAELPVMVWFGATERRLQHSQFKYTADPNITSVGPAKSFFSGGREIWVRGQNLDVVQMPRIRVTVIPRVPQHGQGLGQKHHVVPEKIEEPCLVNSSHLIMCRSPALPGPPQDPWVQVEFILDNMVFDFATLSPTPFSYEADPTLRSLNPEDPTTPFRHKPGSVFSVEGENLDLAMSKEEVVAMIGDGPCVVKTLTRHHLYCEPPVEQPLPHHHALREAPDALPEFTVQMGNLRFSLGHVQYDGESPVAFPVAAQVGLGVGVSLLALGVIVIVLIYRRKSKQALRDYKKVQIQLENLESSVRDRCKKEFTDLMTEMTDLTSDLLGSGIPFLDYKVYAERVFFPGHQESPLHRDLGVPDSRRPTVEQGLGQLSNLLNSKLFLTKFIHTLESQRTFSARDRAYVASLLTVALHGKLEYFTDILRTLLSDLVAQCVAKNPKLMLRRTETVVEKLLTNWMSICLYTFVRDSVGEPLYMLFRGIKHQVDKGPVDSVTGKAKYTLNDNRLLREDVEYRPLTLNALLAVGPGAGEAQSVPVKVLDCDTISQAKEKMLDQLYKGVPLAQRPDSRTLDVEWRSGVAGHLILSDEDVTSELEGLWRRLNTLQHYKVPDGATVALVPCLTKHILRENQDYVPGERTPMLEDVDEGGIRPWHLVKPSDEPEPPRPRRGSLRGGERERAKAIPEIYLTRLLSMKGTLQKFVDDLFQVILSTSRPVPLAVKYFFDLLDEQAQQHGISDQDTIHIWKTNSLPLRFWINIIKNPQFVFDVQTSDNMDAVLLVIAQTFMDACTLADHKLGRDSPINKLLYARDIPRYKQMVERYYADIRQTVPASDQEMNSVLAELSRNCSADLGARVALHELYKYINKYYDQIITALEEDGTAQKMQLGYRLQQIAAAVENKVTDL
Comments
Domain Eukaryota
Family Muridae
Species (Full Name) Rattus norvegicus
PFAM codes  PF01403,  PF01437,  PF01833,  PF08337,  PF17960,  PF18020
InterPro codes  IPR001627,  IPR002165,  IPR002909,  IPR008936,  IPR013548,  IPR013783,  IPR014756,  IPR015943,  IPR016201,  IPR031148,  IPR036352,  IPR041019,  IPR041362,  IPR046800
PDB structures (whole Protein) -
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