| Protein name |
Collagen type VII alpha 1 chain
|
| Main knot |
Unknown (100%)
|
| Knot fingerprint |
K Unknown(x6) 31#41(x2) 31#31(x2) 51(x14) 41(x7) 31(x28)
|
| Global pLDDT |
58.05
|
| Species |
Rat
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v1:
 D3ZE04
|
| PDB structures |
-
|
| Model length |
2588
|
| AlphaFold deposition date |
2021-07-01
|
| AlphaKnot deposition date |
2021-12-18
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
 |
58.6 | 416-2061 | 1646 | 1-415, 2062-2588 | 415 | 527 |
|
Knot | ||||
 |
80.2 | 414-908 | 495 | 1-413, 909-2588 | 413 | 1680 | Slipknot | |||||
 |
78.8 | 302-938 | 637 | 1-301, 939-2588 | 301 | 1650 | Slipknot | |||||
 |
79.1 | 363-951 | 589 | 1-362, 952-2588 | 362 | 1637 | Slipknot | |||||
 |
79.5 | 392-947 | 556 | 1-391, 948-2588 | 391 | 1641 | Slipknot | |||||
 |
34.6 | 1679-2316 | 638 | 1-1678, 2317-2588 | 1678 | 272 | Slipknot |
Model Sequence |
MRLRLLVAALCTAEILVGAPGVWAQPRDRVTCTRLYAADIVFLIDGSSSIGRSNFREVRGFLEGLVLPFSGAANAQGVRFATVQYSDDPQTEFGLDTLGSGGDTIRAIRELSYKGGNTRTGAALLHVSDRVFLPHLTRPGIPKVCILITDGKSQDLVDTAAQKLKRQGVKLFAVGIKNADPEELKRIASQPTSDFFFFVNDFSILRTLLPLISRRVCTTAGGVPVTLPSDDTPSGPRDLVLSEPSSQSLRVQWTAASGPVTGYKIQYTPLTGLGQPLPSERKEVNVPAGETSMRLQGLRPLTDYQVTVVALYANSIGEAVSGTARTTAKEGLELSVQNITSHSLLVAWRRVPGANGYRVTWRDLSGGGAQQQDLSPGQGSVFLDHLKPGTDYEVTVSALFGRSVGPAASLTTRTASSVEQTLRPIILSPTSILLSWNLVPEARGYRLEWHRESGLEPPQKVELLPDVTRYQLDGLQPGTEYRLTLYTLLEGREVATPATVVPTGLEQLVGPVMNLQATELPGQRLRVSWNPVLGATEYRFTVRTPQGVERTLLLPGSQTTFDLDDVRAGISYTVRVSARVGTHEGDASTLTIHRDQEAPLIIPGLQVVASDATRIRVAWGLVPGASGFRISWRTGSGPESSQTLAPDSTVTDILGLQPGTSYQVAVSALRGREEGPPVVIVARTDPLGPVRRVHLTQAGSSSVSITWTGVPGATGYRVSWHSGHGPEKSQLVSGDATVAEIDGLEPDTEYIVRVRTHVAGVDGAPASVVVRTAPEPVGSVSKLQILNASSDVLRVTWVGVPGATSYRLAWGRSEGGPMRHQIVPGNKDSAEITGLEGGVSYSVRVTALVGDREGAPVSIVVTTPPEVPAPLETLQVVQSGEHSLRLHWNRVPGAQGFRLHWQPEGGQEQSLTLGPESNSYNLVGLEPATKYHVWLSVLGQPGEAAPRKVTAYTETPHIPSTGLRVVDTSVNSVTLTWTPVSGASSYILSWRPLRGTGQEVPGGPQTLPGNSSSHRVTGLEPGVPYVFSLTPIQSGVRGSEITVTQKPACPHGQVDVVILLHATRDNAHNAEAVKRFLERLVSALGPLGPQAAQVGLLSYSHRPSPLFPLNSSHDLGVILQKIRDIPYVDPSGNNLGTAVTTAHRYLLAPNAPGRRRQVPGVMVLLVDEPLREDILSPIREAQASGLKVMMLGLVGADPEQLRLLAPGMDPIQTFFAVDNGLDLDRAGSDLAVALCQAAVAIQPQLEPCAVPCPKGQKGEPGVTGPQGQAGPPGPPGLPGRTGAPGPQGAPGSTQAKGERGFPGPEGPPGSPGLPGVPGSPGVKGSPGWSGPRGDRGERGPQGPKGEPGEPGQVIGGGRPGLPGKKGDPGPSGPPGPHGPLGDPGPRGPPGLPGTSVKGDKGDRGERGPPGPGTGASEQGSPGLPGLPGSPGPQGPPGRTGEKGEKGDCEDGGPGLPGQPGVPGEPGLRGAPGVTGPKGDRGLTGTPGEPGEKGERGPPGPVGPQGLPGAAGRPGVEGPEGPPGPPGRRGEKGEPGRPGDPALGPGGAGAKGEKGDAGLPGPRGASGIKGEQGAPGLALPGDPGPKGDPGDRGPIGLTGRAGPTGDSGPPGEKGEPGRPGSPGPVGPRGRDGEAGEKGDEGAPGEPGLPGKAGERGLRGAPGPRGPVGEKGNEGDPGEDGRNGTPGPSGPKGDRGEPGPPGLPGRLVDAALESRDKGEPGQEGPRGPKGDPGPPGASGERGIDGLRGPPGPQGDPGVRGPAGDKGDRGSPGLDGRNGLDGKPGAPGPPGLHGASGKAGDPGRDGLPGLRGEHGPPGPPGPPGVPGKPGDDGKPGLNGKNGEPGDPGEDGRKGEKGDSGVPGREGPDGPKGERGAPGNPGLQGPPGLPGQVGPPGQGFPGVPGVTGPKGDRGETGSKGEQGLPGERGLRGEPGSLPNAERFLETAGIKVSALREIVDTWGESSGSFLLVPERRQGPKGDPGDPGPPGKEGSIGLPGERGLKGERGDPGPQGPPGLALGERGPPGPSGLAGEPGKPGIPGLPGRAGAAGEAGRPGERGERGEKGERGEQGRDGHPGLPGPPGPPGPKVAIEELGPGPAREQGPPGLKGAKGEPGSDGVPGPKGDRGVPGIKGDAGEPGKRGPDGNPGLPGERGVSGPEGKPGLQGPRGTPGPVGSHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLPGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGPPGRDGSSGKDGERGGPGVPGLPGLPGPVGPKGEPGPVGAPGQVVVGPPGAKGEKGAPGDLAGALLGEPGAKGDRGLPGPRGEKGEAGHAGEPGDPGEDGQKGAPGLKGLKGEPGIGVQGPPGPSGPPGMKGDLGPPGAPGAPGIVGFPGQPGPRGETGQPGPVGERGLAGPPGREGAPGPLGPPGPPGSVGAPGASGFKGDKGDSGAGLPGPRGERGEPGLRGEDGHPGQEGPRGLMGPPGSRGERGEKGDPGAAGLKGDKGDSAVIEGPAGPRGAKGDMGERGPRGIDGDQGPRGESGDPGDKGSKGEPGDKGSAGSTGVRGLTGPKARRARCCRDPR
|
| Domain |
Eukaryota
|
| Family |
Muridae
|
| Species (Full Name) |
Rattus norvegicus
|
| PDB structures (whole Protein) |
-
|
D3ZE04