D3ZJF8F1

Fc fragment of IgG-binding protein
AF4
Categories voted by users:
Information
Protein name
Fc fragment of IgG-binding protein
Main knot
Unknown (100%)
Global pLDDT
75.86
Species
Rat
UniProt
Structure Prediction Model
AlphaFold v4:  D3ZJF8
PDB structures
-
Structure in AlphaLasso
  D3ZJF8: LS5----+N  LS4----C  LS3---C  LS3+--C  LS2--N  LS2--C  LL-1,-2  L0  L-2N  L-1N  L-1C  L+3C  L+1N  L+1C
Model length
2583
AlphaFold deposition date
2022-06-01
AlphaKnot deposition date
2023-01-27
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
75.8 296-2137 1842 1-295, 2138-2583 295 446
Model Sequence
MGSPWSWWALWAGAILLWARLTPTEASCQGVVQCASGQRCQMVSGKARCVAESTAVCRAQGDPHYTTFDGRRYDMMGSCSYTMAELCGSDETLPAFSVEAKNEHRGSRQVSYVGLVTVYAYSHSVSMVRGETGFIRIDNQRSRLPASLSEGRLRVYQSGTRGIIELDFGLVISYDWDSQLTLSLPKRFQDQVCGLCGNYNGDPADDFLTPDLEQAPNALEFANSWKLDDGDYLCDDGCHNSCPSCTPGQMQHYKGDRLCGMLALSTGPFSACHELLDPKPFLEDCVFDLCVTGGERLSLCRSLSAYAQACVELGVTLENWRQPSNCPMSCPANSCYDPCSPACPASCNSEALPSNCSSRPCVEGCVCLPGFVASGGDCVPVSSCGCTYQGRPLAPGQEVFADDQCQRRCTCDGATQKVTCRDTSGCPSGEHCNVQNGLLGCYPDNFASCQASGDPHYVSFDGKRFDFMGTCTYLLVGSCGQNAALPAFKVLVENEHRGSQTVSYTRAVRVVAHGVEVAVRRENPGRVLVDGVLQYLPFQAAGGKVRVYRQGNDAVVSTDFGLTVTYNWDAHVTAKVPNSYAKAVCGLCGNFNGNPDDDLALKGGGQANNVLDFGNSWQEEIIPGCGATTPGDCPQLDSLVTQQTQSKKECGILADPEGPFRECHKLLNPQGAIRDCVYDLCLLPGQSGPLCEALAAYAAECQAAGGTVHPWRSEKLCPLTCPPNSHYELCSYGCPLSCGDLPVPGGCGSECRESCVCDEGFALSGESCVPLASCGCVYQGAYHSPGETFYPGPGCESLCHCEEGGLVSCEPSSCGPHEACQPSNGVLGCVAVGTTTCQASGDPHYITFDGRRFDFMGTCVYVLAQTCGTRPGLHQFTVLQENEPWGNGKVSVTKVITVLVANYTLRLEQNQWKVKVNGVDMKLPVVLDGGKIRVSQHGSDAVIETDFGLRVAYDLVYSVRVTIPGNYYQQMCGLCGDYNGDPKDDFQKPDGSQATNPSDFGNSWEEAVPDSPCAPVPPCTGDDCNPACSPELENKYSGEKFCGLLTNPTGPLAACHKLLDPQGPLKDCVFDLCLGGGNQSILCNNIHAYVSACQEAGGQVEPWRTETFCPMKCPPHSHYEVCADTCSLGCWALSTPQKCPEVCAEGCECDSGFLYNGKACVPIQECGCYHNGVYYEPEESVLIENCQQHCVCHPGTGMVCQDHSCKPGEVCEPSGGVLTCITKDPCHGITCRPQETCKVEGGEGVCVPNYHATCWLWGDPHYNSFDGWSYDFQGTCNYLLAGTICPGINAEGLTPFTVTTKNENRGNPAVSYVRLVTVTTLNTNISIHKNEIGKVRVNGALVTLPVYLAGGRISVINGGSKAVLETDFGLQVTYDWNWRVEVTLPSSYHSAVCGLCGNMDKKPENDKVFPNGTVAPSIPAWGGSWQVPGWDPLCWNECQGSCPTCPEDRVEEYEGPGFCGPLAPGTGGPFASCHSHVPPESFFKGCVLDVCLGGGNKDILCQALAAYAAACQAAGIKIEDWRTQAGCEIPCPDNSHYELCGPRCPASCPPPAQHTPPTACDGPCVEGCQCDQGFVLSADQCVPLDGGCGCWVNGTYHEAGTEFWTDTTCSKRCHCGPGGDSLICKSASCGLGEECALLPSGEIGCQPTSIAECEAWGDPHYTTLDGHRFDFQGTCEYLLSAPCHAPPPGIEYFNVTVANEHRGSQAVSYTRSVTLHIYGLSLTLSAQWPRQLQVNGEFVALPFHLDQKLSVYISGADVVVNTASGLSLAFDGNSFVRLRVPAAYAGSLCGLCGNYNKNPNDDLTAVDGKPEGWKVGGAPGCDQCQPEPCPQPCTPEQQEPFRGPDACGIITAPEGPLAPCHSLVPPTKYFEACLLDACQVQGHPGGLCPAIATYVAACQAAGAQLGEWRKPDFCPLQCPANSHYQLCGDSCPVSCPSLSAPEGCETTCREGCVCDSGFVLSGDTCVPVGQCGCLYNGRYYVLGATFYPGPECERLCECGPGGQVTCQEGADCEPYEECRVENGVQACHPTGCGHCLANGGVHYVTLDGRVYDLHGSCSYVLAGVCRPKPGEEEFSIVLEKDSAGEPQRVVVTVADQVVVLARGPQVTVDGEAVALPVATAHVSVTAEGRNVVLQTNKGMKVLFDGDAHILMSIPSSFRGRICGLCGNFNGNWSDDFVLPGGAVAPNVDAFGAAWRAPSSSLGCSEGCGPQGCPVCLAEETEAYEKNDACGKIRDPKGPFATCHKVLSPLEYFRQCVYDMCAHKGDKAYLCRSLAAYTAACQASGAAVKPWRTDSFCPLQCPAHSHYSVCTRSCQGSCAALSGLTGCTTRCFEGCECDDHFLLSQGVCIPAQDCGCVHNGQYVPVNSSLMSSDCSELCYCSETTGLTCRAAGCPSGQVCEIQAGVRQCRAAHGLCSLSVGANLTTFDGALNTISSPGVYELSSRCPGFQKNVPWYRLLADVQPCLNNDKIVSKVHIFFQDGMVTVIPSKGAWVNGLRVDLPATVLTSVSVKKMPDGSMFVHQKAGVQVWLGKDGHLDVMVGDDHAAVLCGVCGNFDGDQTNDAHGSQGKTTIEKWRAQDFSPCPN
Comments
AF1-Artifact
Categories voted by users:
Information
Protein name
Fc fragment of IgG-binding protein
Main knot
Unknown (86%)
Knot fingerprint
K Unknown(x94) 31#52(x39) 52 31(x13)
Global pLDDT
75.86
Species
Rat
UniProt
Structure Prediction Model
AlphaFold v1:  D3ZJF8
PDB structures
-
Structure in AlphaLasso
  D3ZJF8: LS5----+N  LS4----C  LS3---C  LS3+--C  LS2--N  LS2--C  LL-1,-2  L0  L-2N  L-1N  L-1C  L+3C  L+1N  L+1C
Model length
2584
AlphaFold deposition date
2021-07-01
AlphaKnot deposition date
2022-01-13
Knot map

Knot cutoff: 48%


Help Knotting data interpretation
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
76.5 300-1722 1423 1-299, 1723-2584 299 862 Knot
75.8 434-2411 1978 1-433, 2412-2584 433 173 Slipknot
75.1 770-2006 1237 1-769, 2007-2584 769 578 Slipknot
75.3 760-1959 1200 1-759, 1960-2584 759 625 Slipknot
Model Sequence
MGSPWSWWALWAGAILLWARLTPTEASCQGVVQCASGQRCQMVSGKARCVAESTAVCRAQGDPHYTTFDGRRYDMMGSCSYTMAELCGSDETLPAFSVEAKNEHRGSRQVSYVGLVTVYAYSHSVSMVRGETGFIRIDNQRSRLPASLSEGRLRVYQSGTRGIIELDFGLVISYDWDSQLTLSLPKRFQDQVCGLCGNYNGDPADDFLTPDLEQAPNALEFANSWKLDDGDYLCDDGCHNSCPSCTPGQMQHYKGDRLCGMLALSTGPFSACHELLDPKPFLEDCVFDLCVTGGERLSLCRSLSAYAQACVELGVTLENWRQPSNCPMSCPANSCYDPCSPACPASCNSEALPSNCSSRPCVEGCVCLPGFVASGGDCVPVSSCGCTYQGRPLAPGQEVFADDQCQRRCTCDGATQKVTCRDTSGCPSGEHCNVQNGLLGCYPDNFASCQASGDPHYVSFDGKRFDFMGTCTYLLVGSCGQNAALPAFKVLVENEHRGSQTVSYTRAVRVVAHGVEVAVRRENPGRVLVDGVLQYLPFQAAGGKVRVYRQGNDAVVSTDFGLTVTYNWDAHVTAKVPNSYAKAVCGLCGNFNGNPDDDLALKGGGQANNVLDFGNSWQEEIIPGCGATTPGDCPQLDSLVTQQTQSKKECGILADPEGPFRECHKLLNPQGAIRDCVYDLCLLPGQSGPLCEALAAYAAECQAAGGTVHPWRSEKLCPLTCPPNSHYELCSYGCPLSCGDLPVPGGCGSECRESCVCDEGFALSGESCVPLASCGCVYQGAYHSPGETFYPGPGCESLCHCEEGGLVSCEPSSCGPHEACQPSNGVLGCVAVGTTTCQASGDPHYITFDGRRFDFMGTCVYVLAQTCGTRPGLHQFTVLQENEPWGNGKVSVTKVITVLVANYTLRLEQNQWKVKVNGVDMKLPVVLDGGKIRVSQHGSDAVIETDFGLRVAYDLVYSVRVTIPGNYYQQMCGLCGDYNGDPKDDFQKPDGSQATNPSDFGNSWEEAVPDSPCAPVPPCTGDDCNPACSPELENKYSGEKFCGLLTNPTGPLAACHKLLDPQGPLKDCVFDLCLGGGNQSILCNNIHAYVSACQEAGGQVEPWRTETFCPMKCPPHSHYEVCADTCSLGCWALSTPQKCPEVCAEGCECDSGFLYNGKACVPIQECGCYHNGVYYEPEESVLIENCQQHCVCHPGTGMVCQDHSCKPGEVCEPSGGVLTCITKDPCHGITCRPQETCKVEGGEGVCVPNYHATCWLWGDPHYNSFDGWSYDFQGTCNYLLAGTICPGINAEGLTPFTVTTKNENRGNPAVSYVRLVTVTTLNTNISIHKNEIGKVRVNGALVTLPVYLAGGRISVINGGSKAVLETDFGLQVTYDWNWRVEVTLPSSYHSAVCGLCGNMDKKPENDKVFPNGTVAPSIPAWGGSWQVPGWDPLCWNECQGSCPTCPEDRVEEYEGPGFCGPLAPGTGGPFASCHSHVPPESFFKGCVLDVCLGGGNKDILCQALAAYAAACQAAGIKIEDWRTQAGCEIPCPDNSHYELCGPRCPASCPPPAQHTPPTACDGPCVEGCQCDQGFVLSADQCVPLDGGCGCWVNGTYHEAGTEFWTDTTCSKRCHCGPGGDSLICKSASCGLGEECALLPSGEIGCQPTSIAECEAWGDPHYTTLDGHRFDFQGTCEYLLSAPCHAPPPGIEYFNVTVANEHRGSQAVSYTRSVTLHIYGLSLTLSAQWPRQLQVNGEFVALPFHLDQKLSVYISGADVVVNTASGLSLAFDGNSFVRLRVPAAYAGSLCGLCGNYNKNPNDDLTAVDGKPEGWKVGGAPGCDQCQPEPCPQPCTPEQQEPFRGPDACGIITAPEGPLAPCHSLVPPTKYFEACLLDACQVQGHPGGLCPAIATYVAACQAAGAQLGEWRKPDFCPLQCPANSHYQLCGDSCPVSCPSLSAPEGCETTCREGCVCDSGFVLSGDTCVPVGQCGCLYNGRYYVLGATFYPGPECERLCECGPGGQVTCQEGADCEPYEECRVENGVQACHPTGCGHCLANGGVHYVTLDGRVYDLHGSCSYVLAGVCRPKPGEEEFSIVLEKDSAGEPQRVVVTVADQVVVLARGPQVTVDGEAVALPVATAHVSVTAEGRNVVLQTNKGMKVLFDGDAHILMSIPSSFRGRICGLCGNFNGNWSDDFVLPGGAVAPNVDAFGAAWRAPSSSLGCSEGCGPQGCPVCLAEETEAYEKNDACGKIRDPKGPFATCHKVLSPLEYFRQCVYDMCAHKGDKAYLCRSLAAYTAACQASGAAVKPWRTDSFCPLQCPAHSHYSVCTRSCQGSCAALSGLTGCTTRCFEGCECDDHFLLSQGVCIPAQDCGCVHNGQYVPVNSSLMSSDCSELCYCSETTGLTCRAAGCPSGQVCEIQAGVRQCRAAHGLCSLSVGANLTTFDGALNTISSPGVYELSSRCPGFQKNVPWYRLLADVQPCLNNDKIVSKVHIFFQDGMVTVIPSKGAWVNGLRVDLPATVLTSVSVKKMPDGSMFVHQKAGVQVWLGKDGHLDVMVGDDHAAVLCGVCGNFDGDQTNDAHGSQGKTTIEKWRAQDFSPCPN
Comments
Domain Eukaryota
Family Muridae
Species (Full Name) Rattus norvegicus
PFAM codes  PF00094,  PF01826,  PF08742,  PF12714
InterPro codes  IPR001007,  IPR001846,  IPR002919,  IPR003645,  IPR014853,  IPR025615,  IPR036084
PDB structures (whole Protein) -
How to cite