D5BLP7 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Putative rRNA methylase
Main knot	3₁ (79%)
Global pLDDT	90.78
Species	Wangia profunda
UniProt	D5BLP7
Structure Prediction Model	AlphaFold v4: D5BLP7
PDB structures	-
Model length	268
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					92.2	196-237	42	1-195, 238-268	195	31

Model Sequence

MNTIISSTQNKRIKHLLQLQDKSRNRRKESQFVVEGLRETGLALQGGFKLLEVYFCPEFFSENEFKSIPDFEHADAEIIEISSEVYQKLAYRTSTEGVITVFASKENALQKLNFSHNNPLILVAEAPEKPGNIGALLRTADAANVDAVLIANPKTDLYNPNIIRSSVGCVFTNKIAIGTTSEIIKFLQHKNIAIYAAALQASEIYTKIDFTKASAIVVGTEATGLNQEWREAATQNIIIPMNGAIDSMNVSVAAGILIFEAKRQRSFS

Comments

ESM1

Categories voted by users:

Information

Protein name	Putative rRNA methylase
Main knot	3₁ (83%)
Global pLDDT	94.24
Species	Wangia profunda
UniProt	D5BLP7
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	268
ESM generation time	2023-06-23: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					96.3	35-118	84	1-34, 119-268	34	150

Model Sequence

Comments

Domain	Bacteria
Family	Flavobacteriaceae
Species (Full Name)	Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) (Wangia profunda)
Gene	ZPR_1679
PFAM codes	PF00588
InterPro codes	IPR001537, IPR029026, IPR029028, IPR029064
PDB structures (whole Protein)	-

D5BLP7F1

AF4

Model Sequence

ESM1

Model Sequence