D6W7U7 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Vacuolar ATP synthase subunit S1
Main knot	5₁ (42%)
Global pLDDT	76.18
Species	Red flour beetle
UniProt	D6W7U7
Structure Prediction Model	AlphaFold v4: D6W7U7
PDB structures	-
Structure in AlphaLasso	D6W7U7: L₀
Model length	382
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					75.3	1-343	343	344-382	0	39

Model Sequence

MWGTTKLSERVPALHKISQDSFKDTLLEYLKEDPYIIVFVEPTLSPEDFAQHDQNGDIAFPNLHGLKKLKNHVAYKPYVQNPVRAVKQLNKEVTELSIASLLSSSNVPKDNILIIDLNDAKDDEPRFHMLKRHDSDIVSIYKDILEQRNNVLAIYTANHTSWIAPEDITHSRSRSLLQSEDTEEKDTGHLYTSEHVLLYLSKDGMYQVDKESSGILIDDSFTLHEETTSKDNKENITAILSSGKSDLSVNFDIKFNNVSGYWYLTSMSVKKGGKEDPIVGISDYFAPRGFSYHCSTFNLSTTDKNATLSLPGFQIQPFPKNNTFGDAYDCVGFTSVPIWSGLFITIILLLIVTFGLTMMMDIKTMDRFDDPKGKTITITASE

Comments

ESM1

Categories voted by users:

Information

Protein name	Vacuolar ATP synthase subunit S1
Main knot	3₁ (55%)
Global pLDDT	81.91
Species	Red flour beetle
UniProt	D6W7U7
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Structure in AlphaLasso	D6W7U7: L₀
Model length	382
ESM generation time	2023-06-22: download the generated 3D model
AlphaKnot deposition date	2023-06-28

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					72.8	39-171	133	1-38, 172-382	38	211

Model Sequence

Comments

Domain	Eukaryota
Family	Tenebrionidae
Species (Full Name)	Tribolium castaneum (Red flour beetle)
Gene	AUGUSTUS-3.0.2_10758 TcasGA2_TC010758
PFAM codes	PF05827, PF20520
InterPro codes	IPR008388, IPR046755, IPR046756
PDB structures (whole Protein)	-

D6W7U7F1

AF4

Model Sequence

ESM1

Model Sequence