E1ZI40 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (43%)
Global pLDDT	75.34
Species	Green alga
UniProt	E1ZI40
Structure Prediction Model	AlphaFold v4: E1ZI40
PDB structures	-
Structure in AlphaLasso	E1ZI40: L₀
Model length	333
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					74.3	2-225	224	1-1, 226-333	1	108

Model Sequence

WTTIESDPGVFTELLDRMGVKGVQMEELWSLDDDSLNSLQPIYGLIFLFKWQKEEDERPVATDYEERGVFFASQVIHNACATQARRCPCSRRSFRSPAIVSVLMNRPELEIGPELSQLREFTRGFPPDMKGLAIGNSETIRSVHNSFSPPQPILPPEERDDDKGEAFHFIAYVPVGGCLYELDGLKEGPIKLADCSEGDWLTKAAAAITARIRRYAASEVKFNLMACIEDRRQKHQRELAQQRRLQVRLRGPHSAATQRSWDGAAGLAGQAGMPARSLACPRLQAQLAMEEERRGRWRDENVRRRTDYIPFAFQLLSALAERGQLQPLVQKAQ

Comments

ESM1

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (45%)
Global pLDDT	82.98
Species	Green alga
UniProt	E1ZI40
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Structure in AlphaLasso	E1ZI40: L₀
Model length	333
ESM generation time	2023-06-26: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					87.7	3-225	223	1-2, 226-333	2	108

Model Sequence

Comments

Domain	Eukaryota
Family	Chlorellaceae
Species (Full Name)	Chlorella variabilis (Green alga)
Gene	CHLNCDRAFT_10119
PFAM codes	PF01088, PF18031
InterPro codes	IPR001578, IPR017390, IPR036959, IPR038765, IPR041507
PDB structures (whole Protein)	-

E1ZI40F1

AF4

Model Sequence

ESM1

Model Sequence