E5QYJ6 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	tRNA wybutosine-synthesizing protein 4 (EC 2.1.1.290) (EC 2.3.1.231) (tRNA(Phe) (7-(3-amino-3-(methoxycarbonyl)propyl)wyosine(37)-N)-methoxycarbonyltransferase) (tRNA(Phe) (7-(3-amino-3-carboxypr...
Main knot	4₁ (44%)
Global pLDDT	88.81
Species	Microsporum gypseum
UniProt	E5QYJ6
Structure Prediction Model	AlphaFold v4: E5QYJ6
PDB structures	-
Model length	292
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					88.3	1-292	292		0	0

Model Sequence

MKAAALRYRALDTLARDSVELFRESFFKAQRPVVLPRGLFRDYRAASRWFASPSSTPGLILNHAYLEQHGDCYVPLELTIPGERDGNIFERAHRPLSLFLQWARSVQSMPAAEQPGVPRLYLAQCQLLDLPSSLREDFPTPSYVMQAGKGDIYDTNIWVGMAPTYTPLHRDPNPNLFVQLAGSKHVRLLAPDIGRGVFAEVRQALDSARAGHGHNNSAIRGDEMMKGAERQLLDRAVWGVDDDKHRSDTTHDNTGYDAILHPGDALFIPTGWWHSIKGIGQGITASVNWWFR

Comments

ESM1

Categories voted by users:

Information

Protein name	tRNA wybutosine-synthesizing protein 4 (EC 2.1.1.290) (EC 2.3.1.231) (tRNA(Phe) (7-(3-amino-3-(methoxycarbonyl)propyl)wyosine(37)-N)-methoxycarbonyltransferase) (tRNA(Phe) (7-(3-amino-3-carboxypr...
Main knot	4₁ (45%)
Global pLDDT	85.22
Species	Microsporum gypseum
UniProt	E5QYJ6
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	292
ESM generation time	2023-06-26: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					87.8	6-290	285	1-5, 291-292	5	2

Model Sequence

Comments

Domain	Eukaryota
Family	Arthrodermataceae
Species (Full Name)	Arthroderma gypseum (strain ATCC MYA-4604 / CBS 118893) (Microsporum gypseum)
Gene	MGYG_01874
PFAM codes	PF13621
InterPro codes	IPR003347, IPR041667
PDB structures (whole Protein)	-

E5QYJ6F1

AF4

Model Sequence

ESM1

Model Sequence