| Protein name |
Collagen, type XXVIII, alpha 2a
|
| Main knot |
Unknown (48%)
|
| Knot fingerprint |
K Unknown 31#31(x2) 52(x5) 31(x10)
|
| Global pLDDT |
61.63
|
| Species |
Danre
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v1:
 F1QAB3
|
| PDB structures |
-
|
| Model length |
1208
|
| AlphaFold deposition date |
2021-07-01
|
| AlphaKnot deposition date |
2021-12-18
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
 |
58.8 | 24-1135 | 1112 | 1-23, 1136-1208 | 23 | 73 |
|
Knot | ||||
 |
43.9 | 456-787 | 332 | 1-455, 788-1208 | 455 | 421 | Slipknot | |||||
 |
44.2 | 302-802 | 501 | 1-301, 803-1208 | 301 | 406 | Slipknot | |||||
 |
54.6 | 237-1098 | 862 | 1-236, 1099-1208 | 236 | 110 | Slipknot |
Model Sequence |
MAVMAHSLSWCVLCLGLLSVCAQDFYEERTGPTRVKTRGPTASNLQKHNGDAILDEDCSLELAFLLDSSETAKDNHQQEKKFTMDIIEGLQSIRLDTGRKLSWRAALLQYSSHVIIEQTLKQWKGTENFKSSIAPMAYIGHGTYTTYAITNMTKIFVEESSPERIKIALLLTDGFFHPRNPDIFSAMADAKNQGVKVFTIGITRTANDPVNAANLRLLSSTPASRFLYNLQDTNVMEKVITQIAQLANDGCPLSQKCVCEKGERGPSGPAGKKGRPGEDGTPGAKGQKGEAGLSGLPGREGTEGKPGYKGEQGERGECGTPGIKGDRGPEGPVGTQGSRGLQGLPGPQGDIGPEGAQGKKGERGPAGLPGIQGDSGIGLPGPKGDMGFQGRPGPPGPIGIGEPGLPGPQGPQGVQGEKGPQGEGFPGPKGDRGLEGPKGPRGQPGLGLKGDKGEFGPPGLPGPVGLTGVGIQGEKGVEGPRGPPGGRGPPGEGFAGPKGEQGLPGEMGTPGERGQGEPGAKGEPGSSGLAGVPGLPGEDGAPGQKGEPGIPGFRGPEGAQGIGTQGEKGDQGQRGIRGLPGPPGISGPSGAKGEPGTPGRLGMPGLPGRALAGPKGDLGPAGPPGPIGETGYGLPGPKGDRGNPGPHGPSGPKGDGFPGPVGLPGLPGLPGEPGPEGVGVPGPKGDVGFRGLPGLPGPPGEGLQGKQGNIGRPGPPGPHGPPGEGIQGPKGDQGAPGVTGPRGPSGEGLPGAKGDRGLQGERGFKGGKGDMGDPGTPGLAGRQGLKGEQGLTREDIIKLIKEICGCGIKCKERPMELVFVIDSSESVGPENFEIIKDFVIALVDRVTVGRNATRIGLLLYSLEVHLEFNLARYMTKQDVKKAVRNMPYMGEGTYTGTAIRKATQEAFFSARNGVRKVAIVITDGQTDKREPVKLDIAVREAQVANIEMYALGIVNTSDPTQAEFLRELNLIASDPDSEHMFLIDDYNTLPALESKLVSQFCEDENGALYFNRITNGLNGNNGFGYSNGQEDISSYGNTVYGSRFQESLDRSQSHTRGRGHSIPLPISPGPLKPQVENDSDGEDLDIKTQTKSGGTVVVVNKTVQPAQPGTSSSSSSTVSLSSSVSTHSTSVNVDTKPRPVVIKESAPLDPRCQLSFVQGSCRNYVIRWYYEKQSNSCAQFWYGGCDGNDNRFHTEEECKTTCVLSSTV
|
| Domain |
Eukaryota
|
| Family |
Danionidae
|
| Species (Full Name) |
Danio rerio
|
| PDB structures (whole Protein) |
-
|
F1QAB3