F2F0D3 | AlphaKnot 2.0

AF4

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Information

Protein name	Plasmid pRiA4b ORF-3 family protein
Main knot	3₁ (46%)
Global pLDDT	89.5
Species	strain StLB046
UniProt	F2F0D3
Structure Prediction Model	AlphaFold v4: F2F0D3
PDB structures	-
Model length	395
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					93.5	2-108	107	1-1, 109-395	1	287

Model Sequence

MIIQCTKKVLDTLDIDDSKLVSPDGFDQYPESLLGWHANIVTIHRRKVLVLMNNETRFPVVINRLLKKDFANLHSLIYEGIRVALRMEGVSESVIEKYFALSKDLSFSKTANRGMVAKLNRTVNEVEIWAEFLDKDVTIQRFISPLVSKMIQSDTQNKGYYPKEKMIERLAQITDAKDVTQIMDVELYQLNIQLDLDGHEIWRRVQIPANYSFRSLHNLIQIVFDWQNYHLHEFYVERKDNRNLKIVMDDDPNTLEFADSSADEIVQERFVSLAEIFSQHSEVIYEYDFGDSWEHIITLEKSITATSQQAKLIEGKGERPPEDVGGLHGFNEYLAMINDPNSAEDEDFMGWAASQKERTFSLDYTNHRLKSILNNYYYSENEQILDTHDFLSRLK

Comments

ESM1

Categories voted by users:

Information

Protein name	Plasmid pRiA4b ORF-3 family protein
Main knot	3₁ (48%)
Global pLDDT	79.89
Species	strain StLB046
UniProt	F2F0D3
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	395
ESM generation time	2023-06-22: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					90.1	2-108	107	1-1, 109-395	1	287

Model Sequence

Comments

Domain	Bacteria
Family	Planococcaceae
Species (Full Name)	Solibacillus silvestris (strain StLB046) (Bacillus silvestris)
Gene	SSIL_0820
PFAM codes	PF07929
InterPro codes	IPR012912, IPR024047
PDB structures (whole Protein)	-

F2F0D3F1

AF4

Model Sequence

ESM1

Model Sequence