F5YEM2F1

FeMo cofactor biosynthesis protein NifB (Nitrogenase cofactor maturase NifB) (Radical SAM assemblase NifB)
AF4
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Information
Protein name
FeMo cofactor biosynthesis protein NifB (Nitrogenase cofactor maturase NifB) (Radical SAM assemblase NifB)
Main knot
41 (43%)
Global pLDDT
85.18
Species
Treponema azotonutricium
UniProt
Structure Prediction Model
AlphaFold v4:  F5YEM2
PDB structures
-
Model length
306
AlphaFold deposition date
2022-06-01
AlphaKnot deposition date
2023-01-27
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Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
87.3 18-306 289 1-17, 17 0
Model Sequence
MPCGQIPVLGEQFSHVANQHPCFSGEANMNHGRIHLPVSPVCNIQCRFCKRTFNKTEQRPGVTAKILKSETAVSLVERALELYPEITVAGIAGPGDTLASPHALETFTLIHQKLPNLINCLSTNGLLLERYADDIAAAGVQTLTVTVNAVDPVILDKICSRVILDGVVHEGVEGAAILIGAQKQGIRKAADLGLLIKINIVLIPTINGSHIGEIARTVKDLGAGIVNIIPLIPQHEFADFSPPDCFELALAREEAEKSLPVFRHCQHCRADACGIPGKGDMTIADLLPEELQTAEYKKMEQTFSHG
Comments
ESM1
Categories voted by users:
Information
Protein name
FeMo cofactor biosynthesis protein NifB (Nitrogenase cofactor maturase NifB) (Radical SAM assemblase NifB)
Main knot
01 (75%)
Species
Treponema azotonutricium
UniProt
Structure Prediction Model
PDB structures
-
Model length
306
ESM generation time
AlphaKnot deposition date
2023-06-28
Help
Model Sequence
MPCGQIPVLGEQFSHVANQHPCFSGEANMNHGRIHLPVSPVCNIQCRFCKRTFNKTEQRPGVTAKILKSETAVSLVERALELYPEITVAGIAGPGDTLASPHALETFTLIHQKLPNLINCLSTNGLLLERYADDIAAAGVQTLTVTVNAVDPVILDKICSRVILDGVVHEGVEGAAILIGAQKQGIRKAADLGLLIKINIVLIPTINGSHIGEIARTVKDLGAGIVNIIPLIPQHEFADFSPPDCFELALAREEAEKSLPVFRHCQHCRADACGIPGKGDMTIADLLPEELQTAEYKKMEQTFSHG
Comments
Domain Bacteria
Family Breznakiellaceae
Species (Full Name) Leadbettera azotonutricia (strain ATCC BAA-888 / DSM 13862 / ZAS-9) (Treponema azotonutricium)
Gene TREAZ_1489
PFAM codes  PF04055
InterPro codes  IPR000385,  IPR005980,  IPR006638,  IPR007197,  IPR013785
PDB structures (whole Protein) -
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