F7QXT1 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	23S rRNA methyltransferase
Main knot	3₁ (73%)
Global pLDDT	93.39
Species	Ligilactobacillus ruminis
UniProt	F7QXT1
Structure Prediction Model	AlphaFold v4: F7QXT1
PDB structures	-
Model length	255
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					91.5	187-229	43	1-186, 230-255	186	26

Model Sequence

MDIITSSSNQRVKDWKKLSQKKARIKQGKYMLDGWHLVKEAILFDQPISEILVTQDFKHRNELEVPDNVEIIEISDNVAKHLSETPSPQGIFAVVNLPENAEEKPKKATGAWLFLDGVQDPGNIGTMVRTADACGFSGVVFGEGCADMFQPKVVRAMQGSQFHLKLCSGNLIEWAKEFKQRKLPVFGSELNDQARSYDQVGRHSDFALVMGNEGNGMNEKLLKETSLNLYIPIKGHAESLNVAVAAGILMFGLME

Comments

ESM1

Categories voted by users:

Information

Protein name	23S rRNA methyltransferase
Main knot	3₁ (75%)
Global pLDDT	95.8
Species	Ligilactobacillus ruminis
UniProt	F7QXT1
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	255
ESM generation time	2023-06-25: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					97.2	32-232	201	1-31, 233-255	31	23

Model Sequence

Comments

Domain	Bacteria
Family	Lactobacillaceae
Species (Full Name)	Ligilactobacillus ruminis SPM0211
Gene	LRU_00221
PFAM codes	PF00588, PF08032
InterPro codes	IPR001537, IPR013123, IPR029026, IPR029028, IPR029064
PDB structures (whole Protein)	-

F7QXT1F1

AF4

Model Sequence

ESM1

Model Sequence