G9N3L6 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Deoxyribose-phosphate aldolase
Main knot	3₁ (62%)
Global pLDDT	88.34
Species	Gliocladium virens
UniProt	G9N3L6
Structure Prediction Model	AlphaFold v4: G9N3L6
PDB structures	-
Model length	345
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					95.4	251-314	64	1-250, 315-345	250	31

Model Sequence

MSYQEREAKKRKTAHNGGNSQQSFRQPVSLAASEGREWTVSVAFPSSTIATYNAPSLATAEQRIAVPSRIARALAIFSIDEVIVFDDSPVKSRPHNTDKSAYTGDTDPCHFLTHVLSYLEAPPFMRKALFPLHPNLRLTSSLPGLDTPHHPHIKESMIYREGVTIAGMTKSSDGTLVDVGLDKPVEIKEDIPPKTRVTLKISEDESEPAECVHPHAPRTEAGFYWGYTVRQANSLSAVFTESPYEGGYDVSIGTSERGSPVGKEFPYGKRVQFNHVLIVFGGPRGIEYAAMNDEELGGMGIQGGKTRELFDHWVDVMPNQGSRTIRTEEAMYIALTALKRIWDNE

Comments

ESM1

Categories voted by users:

Information

Protein name	Deoxyribose-phosphate aldolase
Main knot	3₁ (80%)
Global pLDDT	84.64
Species	Gliocladium virens
UniProt	G9N3L6
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	345
ESM generation time	2023-06-23: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					60.1	42-279	238	1-41, 280-345	41	66

Model Sequence

Comments

Domain	Eukaryota
Family	Hypocreaceae
Species (Full Name)	Hypocrea virens (strain Gv29-8 / FGSC 10586) (Gliocladium virens) (Trichoderma virens)
Gene	TRIVIDRAFT_43974
PFAM codes	PF02598
InterPro codes	IPR003750, IPR012340, IPR029026, IPR029028
PDB structures (whole Protein)	-

G9N3L6F1

AF4

Model Sequence

ESM1

Model Sequence