H2N4C1 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (88%)
Global pLDDT	78.88
Species	Sumatran orangutan
UniProt	H2N4C1
Structure Prediction Model	AlphaFold v4: H2N4C1
PDB structures	-
Model length	316
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					89.1	76-288	213	1-75, 289-316	75	28

Model Sequence

MSLGWLERPPALRRAAGDGARRLSGSRRGDVWLTSSAAGLLRSVADGSWCGGQLRARGGSGRCVAGAMTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK

Comments

ESM1

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (79%)
Global pLDDT	79.74
Species	Sumatran orangutan
UniProt	H2N4C1
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	316
ESM generation time	2023-06-22: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					47.8	77-288	212	1-76, 289-316	76	28

Model Sequence

Comments

Domain	Eukaryota
Family	Hominidae
Species (Full Name)	Pongo abelii (Sumatran orangutan) (Pongo pygmaeus abelii)
Gene	UCHL5
PFAM codes	PF01088, PF18031
InterPro codes	IPR001578, IPR017390, IPR033837, IPR036959, IPR038765, IPR041507
PDB structures (whole Protein)	-

H2N4C1F1

AF4

Model Sequence

ESM1

Model Sequence