H3A389 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	S-adenosylmethionine synthase (EC 2.5.1.6)
Main knot	3₁ (67%)
Global pLDDT	97.25
Species	Coelacanth
UniProt	H3A389
Structure Prediction Model	AlphaFold v4: H3A389
PDB structures	-
Model length	391
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					98.6	20-281	262	1-19, 282-391	19	110

Model Sequence

MNGPVDGLCNDSTFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPDAKVACETVCKTGMVLLCGEITSRAIVDYQKVVRDAIKAIGYDDSAKGFDFKTCNVLVALEQQSPDIAQGVHLDRHEEDIGAGDQGLMFGYATDETEEFMPLTIMLAHKLNTKLAELRRDGTLPWLRPDSKTQVTVQYNQKNGAVIPIRVHTVVISVQHDEDISLEEMQKALKEKVIRAVVPAKYLDDKTVYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRLLVQVSYAIGVAEPLSISLFTYGTSAKTEKELLEIVHKNFDLRPGVIVRDLDLKRPIYQHTACYGHFGRNEFPWEVPKDIVF

Comments

ESM1

Categories voted by users:

Information

Protein name	S-adenosylmethionine synthase (EC 2.5.1.6)
Main knot	3₁ (72%)
Global pLDDT	82.1
Species	Coelacanth
UniProt	H3A389
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	391
ESM generation time	2023-06-23: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					75.1	22-282	261	1-21, 283-391	21	109

Model Sequence

Comments

Domain	Eukaryota
Family	Coelacanthidae
Species (Full Name)	Latimeria chalumnae (Coelacanth)
Gene	LOC102361022
PFAM codes	PF00438, PF02772, PF02773
InterPro codes	IPR002133, IPR022628, IPR022629, IPR022630, IPR022631, IPR022636
PDB structures (whole Protein)	-

H3A389F1

AF4

Model Sequence

ESM1

Model Sequence