K7K4Y1F1

Ubiquitin carboxyl-terminal hydrolase
AF4
Categories voted by users:
Information
Protein name
Ubiquitin carboxyl-terminal hydrolase
Main knot
52 (84%)
Global pLDDT
87.34
Species
Soybn
UniProt
Structure Prediction Model
AlphaFold v4:  K7K4Y1
PDB structures
-
Model length
260
AlphaFold deposition date
2022-06-01
AlphaKnot deposition date
2023-01-27
Knot map - computed using the Web Server in job: 7f2850c4452083

Knot cutoff: 48%


Help Knotting data interpretation
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range Slipknot tails Slipknot loops Main Knot
95.4 39-253 215 1-38, 254-260 Knot
95.5 41-197 157 1-40, 198-260 Knot
Model Sequence
MAYKPGQWAHKGPRQEYKMRAVTSAKVLWKNKAMASAKRWLPLEANPDVMNQFLWGLGLREDEAECCDVYGLDEELLEMVPKPVLAVLFLYPITTQSEEERLQQENEKKEYNSRVYFMKQTVGNACGTIGLLHALGNLTSEVKLVEGSFFDNFFKSTASLDPLQRATFLENDKEMEVAHLVAATAGDTEASDNATAHFICFACVDDELYELDGRKSVPISHGPSSPSTLLRDAAKAIQSMIQKNPDSFNFNVIALCKKSG
Knot Pull simplified model computed using the Web Server in job: 7f2850c4452083
Comments
AF1-Knot
Categories voted by users:
Information
Protein name
Ubiquitin carboxyl-terminal hydrolase
Main knot
52 (84%)
Knot fingerprint
K 52 31
Global pLDDT
87.34
Species
Soybn
UniProt
Structure Prediction Model
AlphaFold v1:  K7K4Y1
PDB structures
-
Model length
260
AlphaFold deposition date
2021-07-01
AlphaKnot deposition date
2021-12-18
Knot map

Knot cutoff: 48%


Help Knotting data interpretation
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range Slipknot tails Slipknot loops Main Knot
95.0 38-253 216 1-37, 254-260 Knot
95.4 41-197 157 1-40, 198-260 Slipknot
Model Sequence
MAYKPGQWAHKGPRQEYKMRAVTSAKVLWKNKAMASAKRWLPLEANPDVMNQFLWGLGLREDEAECCDVYGLDEELLEMVPKPVLAVLFLYPITTQSEEERLQQENEKKEYNSRVYFMKQTVGNACGTIGLLHALGNLTSEVKLVEGSFFDNFFKSTASLDPLQRATFLENDKEMEVAHLVAATAGDTEASDNATAHFICFACVDDELYELDGRKSVPISHGPSSPSTLLRDAAKAIQSMIQKNPDSFNFNVIALCKKSG
Comments
ESM1
Categories voted by users:
Information
Protein name
Ubiquitin carboxyl-terminal hydrolase
Main knot
52 (75%)
Global pLDDT
86.53
Species
Soybn
UniProt
Structure Prediction Model
PDB structures
-
Model length
260
ESM generation time
AlphaKnot deposition date
2023-06-28
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range Slipknot tails Slipknot loops Main Knot
54.3 43-254 212 1-42, 255-260
Model Sequence
MAYKPGQWAHKGPRQEYKMRAVTSAKVLWKNKAMASAKRWLPLEANPDVMNQFLWGLGLREDEAECCDVYGLDEELLEMVPKPVLAVLFLYPITTQSEEERLQQENEKKEYNSRVYFMKQTVGNACGTIGLLHALGNLTSEVKLVEGSFFDNFFKSTASLDPLQRATFLENDKEMEVAHLVAATAGDTEASDNATAHFICFACVDDELYELDGRKSVPISHGPSSPSTLLRDAAKAIQSMIQKNPDSFNFNVIALCKKSG
Comments
Domain Eukaryota
Family Fabaceae
Species (Full Name) Glycine max
PFAM codes  PF01088
InterPro codes  IPR001578,  IPR036959,  IPR038765
PDB structures (whole Protein) -

Identical Structures in AlphaKnot - computed using the Web Server in job: 7f2850c4452083
Structure ID Identity Length AF4 Model Topology ESM Model Topology Organism Link
K7K4Y1
96.8 %
260
52 (84%)
52 (75%)
Soybn
C6T5B3
96.3 %
227
52 (54%)
52 (56%)
Soybn
A0A1S3VPY4
89.3 %
228
52 (66%)
52 (62%)
Mung bean
V7CEK0
89.2 %
228
52 (63%)
52 (65%)
Kidney bean
A0A0S3T5Q9
89.0 %
227
52 (60%)
52 (57%)
Vigna angularis var
A0A371FK86
83.0 %
243
52 (56%)
52 (55%)
Velvet bean
A0A445KKK8
86.9 %
232
52 (78%)
52 (62%)
Wild soybean
C6T574
86.9 %
232
52 (73%)
52 (64%)
Soybn
A0A444WUD8
85.9 %
235
52 (79%)
52 (72%)
Peanut
A0A6P4DBD0
78.9 %
259
52 (84%)
52 (69%)
Wild peanut
A0A6A4QI18
84.7 %
238
52 (82%)
52 (81%)
White lupine
A0A0S3R5G4
85.6 %
233
52 (73%)
52 (60%)
Vigna angularis var
A0A1S3UJ21
85.6 %
233
52 (75%)
52 (67%)
Mung bean
V7AXC3
85.5 %
233
52 (78%)
52 (65%)
Kidney bean
A0A445G6T4
85.8 %
232
52 (73%)
52 (61%)
Wild soybean
I1MV54
85.8 %
232
52 (73%)
52 (63%)
Soybn
C6TJP0
85.5 %
232
52 (77%)
52 (61%)
Soybn
A0A151QRS0
84.1 %
229
52 (63%)
52 (57%)
Pigeon pea
A0A6A4QK44
84.5 %
233
52 (79%)
52 (61%)
White lupine
A0A0B2R8G6
79.3 %
250
52 (68%)
52 (64%)
Wild soybean
A0A6A4P440
84.0 %
233
52 (74%)
52 (62%)
White lupine
A0A1S2YRW1
83.5 %
228
52 (65%)
52 (67%)
Chickpea
I3S6L3
83.4 %
229
52 (70%)
52 (69%)
Lotus corniculatus var. japonicus
G7JHN2
84.2 %
231
52 (71%)
52 (64%)
Barrel medic
A0A834TTZ4
83.4 %
233
52 (78%)
52 (75%)
Senna tora
I1MV53
78.4 %
250
52 (63%)
52 (58%)
Soybn
A0A1J7GUU2
82.9 %
233
52 (73%)
52 (62%)
Narrow-leaved blue lupine
A0A4P1RHH0
76.3 %
260
52 (81%)
52 (79%)
Narrow-leaved blue lupine
A0A6P4D4U4
83.2 %
232
52 (79%)
52 (57%)
Wild peanut
A0A833X7J8
76.4 %
287
52 (82%)
52 (70%)
English walnut
A0A2I4E7T6
82.6 %
233
52 (64%)
52 (61%)
English walnut
A0A445ASA2
82.6 %
232
52 (78%)
52 (54%)
Peanut
A0A5B6YWM5
82.3 %
260
52 (87%)
52 (80%)
Dove tree
A0A445ERV1
82.5 %
232
52 (80%)
52 (56%)
Peanut
A0A2I4F0G2
82.0 %
233
52 (47%)
52 (61%)
English walnut
A0A7J7CJQ5
81.7 %
233
52 (80%)
52 (55%)
Thunder God vine
A0A6P5SJ70
81.7 %
233
52 (82%)
52 (74%)
Cherry
A0A218XVN6
81.1 %
233
52 (74%)
52 (58%)
Pomegranate
A0A7N2N2F3
81.7 %
232
52 (77%)
52 (57%)
Valley oak
A0A5E4GAL1
81.4 %
233
52 (76%)
52 (77%)
Almond
A0A059C156
81.7 %
232
52 (68%)
52 (61%)
Flooded gum
A0A5N5H4A8
81.3 %
233
52 (77%)
52 (75%)
Pyrus ussuriensis
M5WVD2
81.3 %
233
52 (80%)
52 (78%)
Peach
A0A498K5J8
81.3 %
233
52 (79%)
52 (65%)
Apple
D7T5I6
81.4 %
231
52 (77%)
52 (72%)
Grape
A0A6A6MMT7
81.4 %
232
52 (59%)
52 (61%)
Para rubber tree
A0A2P6P8R3
81.0 %
233
52 (77%)
52 (74%)
China rose
A0A1S3UKQ9
81.2 %
225
52 (54%)
52 (57%)
Mung bean
A0A5N5IAB6
80.9 %
233
52 (78%)
52 (62%)
Pyrus ussuriensis
A0A540M8Y4
80.9 %
233
52 (82%)
52 (68%)
Siberian crab apple
A0A6P4NW14
81.4 %
231
52 (79%)
52 (74%)
Tree cotton
A0A498JNR8
80.8 %
233
52 (80%)
52 (64%)
Apple
A0A067KY60
80.8 %
232
52 (61%)
52 (65%)
Barbados nut
A0A061G3U9
80.7 %
233
52 (68%)
52 (75%)
Cacao
A0A7N2N1I8
81.0 %
232
52 (73%)
52 (58%)
Valley oak
A0A0S3R574
80.9 %
225
52 (63%)
52 (57%)
Vigna angularis var
A0A2R6QNS1
80.9 %
229
52 (72%)
52 (69%)
Chinese soft-hair kiwi
A0A6J1BHW8
80.6 %
233
52 (68%)
52 (79%)
Herrania umbratica
A0A6P6A0L3
81.3 %
231
52 (63%)
52 (75%)
Durian
A0A5J5QIF7
81.2 %
231
52 (72%)
52 (78%)
Sea-island cotton
A0A5D2BLX0
81.2 %
231
52 (71%)
52 (72%)
Darwin's cotton
A0A540NC55
80.5 %
233
52 (79%)
52 (63%)
Siberian crab apple
A0A5J5A748
81.0 %
229
52 (64%)
52 (69%)
Nyssa sinensis
A0A2C9WCB6
80.6 %
232
52 (71%)
52 (62%)
Cassava
A0A5D2TZ79
81.0 %
231
52 (72%)
52 (75%)
Cotton
A0A6A3AWM2
79.3 %
232
52 (78%)
52 (77%)
Rose of Sharon
A0A5J5UTG8
80.7 %
231
52 (77%)
52 (73%)
Sea-island cotton
A0A1U8MSN1
80.7 %
231
52 (71%)
52 (74%)
Upland cotton
A0A5D2FNA3
80.7 %
231
52 (73%)
52 (74%)
Darwin's cotton
A0A1U8MPL5
79.7 %
233
52 (81%)
52 (80%)
Upland cotton
A0A5D2N1G4
79.7 %
233
52 (82%)
52 (81%)
Hawaiian cotton
A0A5D2WY22
79.7 %
233
52 (80%)
52 (79%)
Cotton
A0A5J5TIZ9
79.7 %
233
52 (76%)
52 (75%)
Sea-island cotton
A0A5D2PHT4
80.6 %
231
52 (76%)
52 (79%)
Hawaiian cotton
A0A0D2R7Q1
80.5 %
231
52 (74%)
52 (76%)
New World cotton
A0A5D2JXK2
80.5 %
231
52 (79%)
52 (72%)
Hawaiian cotton
A0A5D2YDX5
80.4 %
231
52 (73%)
52 (71%)
Cotton
A0A0B0MWZ4
80.4 %
231
52 (75%)
52 (70%)
Tree cotton
A0A1R3KAH0
79.7 %
233
52 (74%)
52 (74%)
Corchorus olitorius
A0A1R3GNC8
79.7 %
233
52 (74%)
52 (74%)
Jute
A0A6P4BI85
79.7 %
232
52 (54%)
52 (54%)
Chinese jujube
A0A2C9WJ28
80.0 %
232
52 (78%)
52 (76%)
Cassava
A0A6P4PXS4
79.3 %
233
52 (85%)
52 (81%)
Tree cotton
A0A6A2YX33
78.6 %
232
52 (79%)
52 (77%)
Rose of Sharon
A0A6P4BGY9
79.4 %
232
52 (62%)
52 (58%)
Chinese jujube
A0A314UW74
79.4 %
231
52 (78%)
52 (77%)
Prunus yedoensis var
A0A2N9G498
77.6 %
238
52 (74%)
52 (55%)
Beechnut
A0A2R6PMB0
79.5 %
229
52 (70%)
52 (72%)
Chinese soft-hair kiwi
A0A5D2IDB4
79.8 %
230
52 (81%)
52 (82%)
Hawaiian cotton
A0A5D2SHG6
79.8 %
230
52 (83%)
52 (79%)
Cotton
A0A4Y1RGI1
81.3 %
226
52 (80%)
52 (76%)
Almond
A0A5J5P1R2
79.7 %
230
52 (86%)
52 (79%)
Sea-island cotton
A0A0D2U898
79.7 %
230
52 (78%)
52 (80%)
New World cotton
A0A5D2AF19
79.7 %
230
52 (80%)
52 (79%)
Darwin's cotton
A0A4U5PY16
79.0 %
232
52 (53%)
52 (49%)
White poplar
B9T288
79.3 %
232
52 (70%)
52 (61%)
Castor bean
A0A2K2B3H3
78.9 %
232
52 (50%)
52 (48%)
Western balsam poplar
A0A836E4Z5
78.9 %
232
52 (50%)
52 (57%)
Salix suchowensis
A0A1S3X2S4
79.5 %
231
52 (75%)
52 (79%)
Common tobacco
A0A6P5WR44
79.5 %
231
52 (65%)
52 (89%)
Durian
A0A6P5WSC5
79.5 %
231
52 (68%)
52 (90%)
Durian
W9RXQ9
78.9 %
233
52 (85%)
N/A
Morus notabilis
A0A1S3Y287
79.1 %
230
52 (61%)
52 (53%)
Common tobacco
A0A1S3BKK2
78.2 %
236
52 (80%)
52 (76%)
Muskmelon
A0A5C7H2K6
75.9 %
240
52 (78%)
52 (64%)
Acer yangbiense
A0A5A7TC70
78.2 %
287
52 (89%)
52 (75%)
Cucumis melo var
A0A0R0JRR7
88.3 %
205
52 (44%)
52 (37%)
Soybn
A0A835KDI2
78.7 %
232
52 (42%)
52 (56%)
Salix dunnii
A0A7J6FYB4
79.0 %
232
52 (75%)
52 (68%)
Hemp
A0A2P2JZD4
79.0 %
232
52 (77%)
52 (63%)
Asiatic mangrove
A0A6A3AZL5
77.8 %
232
52 (78%)
52 (73%)
Rose of Sharon
A0A6N2N7E6
78.6 %
232
52 (51%)
52 (58%)
Common osier
A0A6I9TEV2
78.9 %
228
52 (62%)
52 (63%)
Oriental sesame
A0A1U7W2F9
78.7 %
230
52 (64%)
52 (52%)
Wood tobacco
A0A1S3ZFK9
78.7 %
230
52 (68%)
52 (51%)
Common tobacco
A0A5A7NYT5
78.2 %
229
52 (71%)
52 (63%)
Asiatic witchweed
A0A5N5N9I9
77.9 %
232
52 (61%)
52 (57%)
Salix brachista
A0A1S3Y1Z6
77.6 %
232
52 (68%)
52 (53%)
Common tobacco
A0A1J6IBR4
77.6 %
232
52 (64%)
52 (53%)
Coyote tobacco
A0A834ZVU6
74.0 %
249
52 (64%)
52 (66%)
Tetracentron sinense
A0A022PXD5
77.8 %
230
52 (65%)
52 (56%)
Yellow monkey flower
A0A2I4E7W1
77.7 %
223
52 (73%)
52 (61%)
English walnut
A0A1Q3D946
77.2 %
235
52 (75%)
52 (58%)
Albany pitcher plant
M1C8G8
77.7 %
230
52 (67%)
52 (64%)
Potato
A0A5B6VJ56
76.2 %
238
52 (75%)
52 (68%)
Gossypium australe
A0A6A4NAE9
83.4 %
238
52 (79%)
01 (86%)
White lupine
A0A1S3ZFB3
77.2 %
232
52 (71%)
52 (53%)
Common tobacco
A0A1U7WAY7
77.2 %
232
52 (63%)
52 (53%)
Wood tobacco
A0A2P5CUF6
70.5 %
259
52 (67%)
52 (53%)
Sponia andersonii
A0A3Q7HQP8
77.6 %
230
52 (67%)
52 (66%)
Tomato
A0A0A0L5F5
77.5 %
288
52 (93%)
52 (84%)
Cucumber
A0A2G9H7P1
77.4 %
229
52 (59%)
52 (46%)
Handroanthus impetiginosus
A0A0V0HJX1
78.0 %
228
52 (65%)
52 (62%)
Chaco potato
A0A6J5USG9
76.9 %
223
52 (71%)
52 (77%)
Apricot
A0A1S4C8R8
78.1 %
227
52 (57%)
52 (52%)
Common tobacco
A0A1U7Y384
78.1 %
227
52 (53%)
52 (55%)
Wood tobacco
A0A6N2B1Q9
77.2 %
230
52 (64%)
52 (64%)
Tomato
V4MR76
76.3 %
234
52 (68%)
52 (67%)
Saltwater cress
A0A2G2ZA69
77.1 %
232
52 (70%)
52 (68%)
Capsicum pepper
A0A2G3AY59
76.9 %
232
52 (66%)
52 (67%)
Scotch bonnet
V4VL35
76.9 %
232
52 (70%)
52 (53%)
Clementine
A0A2G9H895
76.4 %
229
52 (60%)
52 (62%)
Handroanthus impetiginosus
A0A2G2WJU2
76.4 %
232
52 (68%)
52 (68%)
Peruvian pepper
A0A2Z7DK80
75.8 %
230
52 (64%)
52 (67%)
Dorcoceras hygrometricum
A0A6J1GIV7
75.8 %
234
52 (74%)
52 (61%)
Winter crookneck squash
A0A4D8Z9S5
74.9 %
229
52 (63%)
52 (51%)
Scarlet sage
V4TP23
76.0 %
232
52 (64%)
52 (61%)
Clementine
A0A6J1HQ82
75.5 %
234
52 (75%)
52 (66%)
Pumpkin
A0A4D9A4W2
74.8 %
229
52 (62%)
52 (47%)
Scarlet sage
A0A803L5J5
76.5 %
229
52 (67%)
52 (66%)
Quinoa
A0A6J1KV75
75.2 %
234
52 (66%)
52 (67%)
Pumpkin
A0A251S2Y7
76.3 %
228
52 (67%)
52 (53%)
Common sunflower
A0A6J1E676
74.7 %
234
52 (77%)
52 (78%)
Winter crookneck squash
A0A2U1LK86
75.4 %
229
52 (70%)
52 (66%)
Sweet wormwood
A0A2J6KKC9
74.8 %
231
52 (76%)
52 (69%)
Garden lettuce
A0A6S7PZ81
74.8 %
274
52 (86%)
52 (67%)
Willowleaf lettuce
A0A166FN67
74.7 %
231
52 (70%)
52 (71%)
Carrot
R0F2F9
74.3 %
234
52 (65%)
52 (70%)
Capsella rubella
A0A5N6R4R7
74.8 %
225
52 (77%)
52 (74%)
Carpinus fangiana
A0A6J5X7Z3
81.0 %
212
31 (71%)
31 (65%)
Apricot
D7MBX7
74.1 %
234
52 (58%)
52 (59%)
Lyre-leaved rock-cress
A0A1U8GG87
75.6 %
229
52 (66%)
52 (67%)
Capsicum pepper
A0A6P6TU93
74.8 %
229
52 (66%)
52 (68%)
Arabian coffee
A0A178V2F1
73.6 %
234
52 (74%)
52 (60%)
Arath
Q8GWE1
73.6 %
234
52 (69%)
52 (61%)
Arath
A0A2P5X1L6
74.6 %
218
31 (71%)
52 (71%)
Sea-island cotton
A0A654FQE3
73.4 %
234
52 (69%)
52 (63%)
Arath
A0A068UNJ8
74.7 %
228
52 (68%)
52 (75%)
Robusta coffee
A0A398A5G7
73.3 %
234
52 (68%)
52 (52%)
Field mustard
A0A3P6ACL4
73.3 %
234
52 (68%)
52 (44%)
Field mustard
A0A5J4ZWB9
80.6 %
208
52 (70%)
52 (61%)
Nyssa sinensis
A0A0L9TQ53
83.0 %
200
52 (79%)
52 (69%)
Azuki bean
A0A2U1PFM4
70.3 %
243
52 (70%)
52 (59%)
Sweet wormwood
M4D850
73.1 %
234
52 (68%)
52 (53%)
Chinese cabbage
A0A816W853
73.1 %
234
52 (72%)
52 (47%)
Rape
A0A6P6TY65
74.3 %
228
52 (72%)
52 (69%)
Arabian coffee
A0A0D3DEL7
72.9 %
234
52 (69%)
52 (50%)
Brassica oleracea var
A0A3P6F9H9
72.9 %
234
52 (67%)
52 (52%)
Wild cabbage
A0A166JA44
74.4 %
229
52 (69%)
52 (67%)
Carrot
A0A1U8GG72
73.0 %
234
52 (67%)
52 (50%)
Capsicum pepper
A0A059C0N8
81.8 %
205
52 (58%)
52 (45%)
Flooded gum
A0A0B0NDH6
72.1 %
234
52 (81%)
52 (84%)
Tree cotton
A0A0D2TBB1
72.2 %
213
31 (79%)
31 (71%)
New World cotton
A0A6P6TZV8
72.4 %
225
52 (70%)
52 (75%)
Arabian coffee
A0A803PMP2
79.5 %
203
31 (66%)
31 (74%)
Hemp
A0A5A7PPG3
70.6 %
228
52 (80%)
52 (68%)
Asiatic witchweed
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