K8XNN3 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	rRNA methyltransferase
Main knot	3₁ (89%)
Global pLDDT	84.52
Species	Rhodococcus opacus
UniProt	K8XNN3
Structure Prediction Model	AlphaFold v4: K8XNN3
PDB structures	-
Model length	322
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					93.2	251-292	42	1-250, 293-322	250	30

Model Sequence

MAGNSSRRGAIRKAGTKKGQVAGSGGQRRKGLEGRGATPPAESRTKHPAAKRAARAAREADKQPGRGRQTAGRKVLDGPENVLGRNPVVECLRAGVPATALYVAVGTESDDRLKESVQRAADAGISILEVPRTDLDRLSANGMHQGIALQVPPYRYAHPDDLIAEARKHQEAPLLVALDNITDPRNLGAVVRSVAAFGGHGVVIPERRSASVTAVAWRTSAGAAARLPIARATNLTRTLKDWASKGVQVVGLDAGGDTTLDEFDGSGPVVVVVGSEGKGLSRLVRENCDAILSIPMAGPVESLNASVAAGVVLADIARRRRG

Comments

ESM1

Categories voted by users:

Information

Protein name	rRNA methyltransferase
Main knot	3₁ (87%)
Global pLDDT	88.98
Species	Rhodococcus opacus
UniProt	K8XNN3
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	322
ESM generation time	2023-06-23: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					70.0	251-292	42	1-250, 293-322	250	30

Model Sequence

Comments

Domain	Bacteria
Family	Nocardiaceae
Species (Full Name)	Rhodococcus opacus M213
Gene	WSS_A31795
PFAM codes	PF00588, PF08032
InterPro codes	IPR001537, IPR004441, IPR013123, IPR029026, IPR029028, IPR029064
PDB structures (whole Protein)	-

K8XNN3F1

AF4

Model Sequence

ESM1

Model Sequence