K8YV13 | AlphaKnot 2.0

AF4

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Information

Protein name	Amino acid-polyamine-organocation family
Main knot	4₁ (77%)
Global pLDDT	79.87
Species	strain CCMP526
UniProt	K8YV13
Structure Prediction Model	AlphaFold v4: K8YV13
PDB structures	-
Model length	378
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					93.4	120-353	234	1-119, 354-378	119	25

Model Sequence

MPSPTKQGETDRSPATEAEPLLSRVDSIESWGLSNPSDAIPTTRHQPMRHQLSDPITGPSKGWRDRLSNKSNIETWTFPGWGRYNLQMTVTDEELAEIEADMDQQQPPKLNQWEATAICGNDIMASCFYVVGLVTMSAGKMAPLALLLVSCVLYLIRFLYAEAITALPMNGGSFNVLLNSTSKGIASSAATLALVSYIATGVVSATSAVDYLKKVVSVPNPLLAILGLLFLFAVLVFLGIKESAGVAQVIFWIHILTLTLLCACSMVYVVADPSTLRENFRAPYPDVELGGVIRSGSFATAIFFGYTSAILGVSGFESSSQFVQSQAPGVFLKTLRNMWVGAFVFNPTISFLSLGVLPLARIVEDESVVLAKMAKHVG

Comments

ESM1

Categories voted by users:

Information

Protein name	Amino acid-polyamine-organocation family
Main knot	4₁ (69%)
Global pLDDT	79.15
Species	strain CCMP526
UniProt	K8YV13
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	378
ESM generation time	2023-06-25: download the generated 3D model
AlphaKnot deposition date	2023-06-28

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					48.1	120-353	234	1-119, 354-378	119	25

Model Sequence

Comments

Domain	Eukaryota
Family	Monodopsidaceae
Species (Full Name)	Nannochloropsis gaditana (strain CCMP526) (Green microalga) (Microchloropsis gaditana)
Gene	NGA_0428400
PFAM codes	PF13520
InterPro codes	IPR002293
PDB structures (whole Protein)	-

K8YV13F1

AF4

Model Sequence

ESM1

Model Sequence