| Protein name |
Protein virC2
|
| Main knot |
31 (74%)
|
| Global pLDDT |
79.92
|
| Species |
Agrobacterium tumefaciens
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 P07166
|
| PDB structures | |
| Structures in KnotProt | |
| Model length |
202
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
95.9 | 89-189 | 101 | 1-88, 190-202 | 88 | 13 |
|
Model Sequence |
MGIRKPALSVGEARRLAAARPEIVHPSLPVATQNSTLPQPPENLDEEDRRPAPATAKRCHSSDQQSMLTVDALSSTTAPEKIQVFLSARPPAPEVSKIYDNLILQYSPSKSLQMILRRALGDFENMLADGSFRAAPKSYPIPHTAFEKSIIVQTSRMFPVSLIEAARNHFDPLGLETARAFGHKLATAALACFFAREKATNS
|
| Protein name |
Protein virC2
|
| Main knot |
31 (74%)
|
| Global pLDDT |
70.93
|
| Species |
Agrobacterium tumefaciens
|
| UniProt | |
| Structure Prediction Model |
ESM v1: esmfold_v1 - nov. 2022
|
| PDB structures | |
| Structures in KnotProt | |
| Model length |
202
|
| ESM generation time |
2023-06-25: download the generated 3D model
|
| AlphaKnot deposition date |
2023-06-28
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
75.6 | 89-191 | 103 | 1-88, 192-202 | 88 | 11 |
|
Model Sequence |
MGIRKPALSVGEARRLAAARPEIVHPSLPVATQNSTLPQPPENLDEEDRRPAPATAKRCHSSDQQSMLTVDALSSTTAPEKIQVFLSARPPAPEVSKIYDNLILQYSPSKSLQMILRRALGDFENMLADGSFRAAPKSYPIPHTAFEKSIIVQTSRMFPVSLIEAARNHFDPLGLETARAFGHKLATAALACFFAREKATNS
|
| Domain |
Bacteria
|
| Family |
Rhizobiaceae
|
| Species (Full Name) |
Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens (strain C58))
|
| Gene |
virC2 Atu6179 AGR_pTi_16
|
| PFAM codes |
PF07181
|
| InterPro codes |
 IPR009841, IPR010985, IPR038473
|
| PDB structures (whole Protein) |
 2RH3 A: 82-202
|
#similar chains with experimentally solved models (PDB) in the AlphaKnot 2.0 database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains with experimentally solved models not found in AlphaKnot 2.0 database but found in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
P07166
2RH3 A, K -3.1: 82-202