P0AGJ7F1

tRNA (cytidine(34)-2'-O)-methyltransferase
AF4
Categories voted by users:
Information
Protein name
tRNA (cytidine(34)-2'-O)-methyltransferase
Main knot
31 (86%)
Global pLDDT
94.18
Species
Ecoli
UniProt
Structure Prediction Model
AlphaFold v4:  P0AGJ7
PDB structures
Structures in KnotProt
Model length
157
AlphaFold deposition date
2022-06-01
AlphaKnot deposition date
2023-01-27
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
96.9 77-120 44 1-76, 121-157 76 37
Model Sequence
MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQLGYPGAVLRD
Comments
AF1-Knot
Categories voted by users:
Information
Protein name
tRNA (cytidine(34)-2'-O)-methyltransferase
Main knot
31 (83%)
Knot fingerprint
K 31
Global pLDDT
94.18
Species
Ecoli
UniProt
Structure Prediction Model
AlphaFold v1:  P0AGJ7
PDB structures
Structures in KnotProt
Model length
157
AlphaFold deposition date
2021-07-01
AlphaKnot deposition date
2021-12-18
Knot map

Knot cutoff: 48%


Help Knotting data interpretation
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
97.0 77-119 43 1-76, 120-157 76 38
Model Sequence
MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQLGYPGAVLRD
Comments
ESM1
Categories voted by users:
Information
Protein name
tRNA (cytidine(34)-2'-O)-methyltransferase
Main knot
31 (82%)
Global pLDDT
84.64
Species
Ecoli
UniProt
Structure Prediction Model
PDB structures
Structures in KnotProt
Model length
157
ESM generation time
AlphaKnot deposition date
2023-06-28
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
90.2 77-120 44 1-76, 121-157 76 37
Model Sequence
MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQLGYPGAVLRD
Comments
Domain Bacteria
Family Enterobacteriaceae
Species (Full Name) Escherichia coli
PFAM codes  PF00588
InterPro codes  IPR001537,  IPR016914,  IPR029026,  IPR029028
PDB structures (whole Protein)  4JAK A/B: 2-157  4JAL A/B: 2-157
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similar chains with experimentally solved models (PDB) in the AlphaKnot 2.0 database (?% sequence similarity)
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similar chains with experimentally solved models not found in AlphaKnot 2.0 database but found in thePDB database (?% sequence similarity)

  
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