P13444F1

S-adenosylmethionine synthase isoform type-1
AF4
Categories voted by users:
Information
Protein name
S-adenosylmethionine synthase isoform type-1
Main knot
31 (73%)
Global pLDDT
96.63
Species
Rat
UniProt
Structure Prediction Model
AlphaFold v4:  P13444
PDB structures
Structures in KnotProt
Model length
397
AlphaFold deposition date
2022-06-01
AlphaKnot deposition date
2023-01-27
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
98.6 27-284 258 1-26, 285-397 26 113
Model Sequence
MNGPVDGLCDHSLSEEGAFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAMIDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCVHLDRNEEDVGAGDQGLMFGYATDETEECMPLTIVLAHKLNTRMADLRRSGVLPWLRPDSKTQVTVQYVQDNGAVIPVRVHTIVISVQHNEDITLEAMREALKEQVIKAVVPAKYLDEDTIYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYAIGVAEPLSISIFTYGTSKKTERDELLEVVNKNFDLRPGVIVRDLDLKKPIYQKTACYGHFGRSEFPWEVPKKLVF
Comments
AF1-Knot
Categories voted by users:
Information
Protein name
S-adenosylmethionine synthase isoform type-1
Main knot
31 (76%)
Knot fingerprint
K 31
Global pLDDT
96.63
Species
Rat
UniProt
Structure Prediction Model
AlphaFold v1:  P13444
PDB structures
Structures in KnotProt
Model length
397
AlphaFold deposition date
2021-07-01
AlphaKnot deposition date
2021-12-18
Knot map

Knot cutoff: 48%


Help Knotting data interpretation
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
98.4 28-282 255 1-27, 283-397 27 115
Model Sequence
MNGPVDGLCDHSLSEEGAFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAMIDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCVHLDRNEEDVGAGDQGLMFGYATDETEECMPLTIVLAHKLNTRMADLRRSGVLPWLRPDSKTQVTVQYVQDNGAVIPVRVHTIVISVQHNEDITLEAMREALKEQVIKAVVPAKYLDEDTIYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYAIGVAEPLSISIFTYGTSKKTERDELLEVVNKNFDLRPGVIVRDLDLKKPIYQKTACYGHFGRSEFPWEVPKKLVF
Comments
ESM1
Categories voted by users:
Information
Protein name
S-adenosylmethionine synthase isoform type-1
Main knot
31 (77%)
Global pLDDT
83.04
Species
Rat
UniProt
Structure Prediction Model
PDB structures
Structures in KnotProt
Model length
397
ESM generation time
AlphaKnot deposition date
2023-06-28
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
71.5 26-285 260 1-25, 286-397 25 112
Model Sequence
MNGPVDGLCDHSLSEEGAFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAMIDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCVHLDRNEEDVGAGDQGLMFGYATDETEECMPLTIVLAHKLNTRMADLRRSGVLPWLRPDSKTQVTVQYVQDNGAVIPVRVHTIVISVQHNEDITLEAMREALKEQVIKAVVPAKYLDEDTIYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYAIGVAEPLSISIFTYGTSKKTERDELLEVVNKNFDLRPGVIVRDLDLKKPIYQKTACYGHFGRSEFPWEVPKKLVF
Comments
Domain Eukaryota
Family Muridae
Species (Full Name) Rattus norvegicus
PFAM codes  PF00438,  PF02772,  PF02773
InterPro codes  IPR002133,  IPR022628,  IPR022629,  IPR022630,  IPR022631,  IPR022636
PDB structures (whole Protein)  1O90 A/B: 1-397  1O92 A/B: 1-397  1O93 A/B: 1-397  1O9T A/B: 1-397  1QM4 A/B: 1-397
...loading similar chains, please wait...
similar chains with experimentally solved models (PDB) in the AlphaKnot 2.0 database (?% sequence similarity)
...loading similar chains, please wait...
similar chains with experimentally solved models not found in AlphaKnot 2.0 database but found in thePDB database (?% sequence similarity)

  
#similar chains with experimentally solved models (PDB) in the AlphaKnot 2.0 database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
        #similar chains with experimentally solved models not found in AlphaKnot 2.0 database but found in the pdb database (?% sequence similarity)
        ...loading similar chains, please wait...
How to cite