P13460 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Protein virC2
Main knot	3₁ (78%)
Global pLDDT	80.71
Species	Agrobacterium rhizogenes
UniProt	P13460
Structure Prediction Model	AlphaFold v4: P13460
PDB structures	-
Model length	202
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

Parsing response... [0/0]

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					95.9	89-189	101	1-88, 190-202	88	13

Model Sequence

MGIRKPALSVGEARRLAAARPEMVQAHLPVATQNSALPQPPENPDQEDRRPAPAVAKRHPSADRQSMLTVDALSSTTAPEKIQVFLSARPPAPQVSKIYDNLILQYSPSKSLQMILRRALGDFEKMLADGSFRTAPKSYPIPQTASEKSIIVQTSRMFPVPLLEVARNHFDPLGLETARAFGHKLATAALASFFAGEKTTKR

Comments

ESM1

Categories voted by users:

Information

Protein name	Protein virC2
Main knot	3₁ (80%)
Global pLDDT	71.86
Species	Agrobacterium rhizogenes
UniProt	P13460
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	202
ESM generation time	2023-06-25: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					65.8	89-189	101	1-88, 190-202	88	13

Model Sequence

Comments

Domain	Bacteria
Family	Rhizobiaceae
Species (Full Name)	Agrobacterium rhizogenes
Gene	virC2
PFAM codes	PF07181
InterPro codes	IPR009841, IPR010985, IPR038473
PDB structures (whole Protein)	-

P13460F1

AF4

Model Sequence

ESM1

Model Sequence