P50306 | AlphaKnot 2.0

AF4

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Information

Protein name	Probable S-adenosylmethionine synthase 4
Main knot	3₁ (61%)
Global pLDDT	96.3
Species	Caeel
UniProt	P50306
Structure Prediction Model	AlphaFold v4: P50306
PDB structures	-
Model length	404
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					97.4	14-271	258	1-13, 272-404	13	133

Model Sequence

MPQHKFLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVACETVTKTGMIMLCGEITSKAVVDYQVLVRNVIKKIGYDDSSKGFDYKTCNVLVALEQQSPEIAAGVHVDKDSDDVGAGDQGIMFGYATDETEEAMPLTLLLSHKLNRKLHELRRSGELEWVRPDSKTQVTIEYASEGGACVPLRVHTVVISTQHSPDISLDDLRKELIEKVIKAVIPANLIDDKTIYHLNPCGSFIIGGPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAKPLSVMVFSFGTSALSEEDLLTIVNDNFDLRPGKIIKNLDLKRPIYEPTAENGHFGHNNFPWEQPRNLKISADMLAKSQGPAQPDVIGIAH

Comments

AF1-Knot

Categories voted by users:

Information

Protein name	Probable S-adenosylmethionine synthase 4
Main knot	3₁ (63%)
Knot fingerprint	K 3₁
Global pLDDT	96.3
Species	Caeel
UniProt	P50306
Structure Prediction Model	AlphaFold v1: P50306
PDB structures	-
Model length	404
AlphaFold deposition date	2021-07-01
AlphaKnot deposition date	2021-12-18

Knot map

Knot cutoff: 48%

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					97.4	15-270	256	1-14, 271-404	14	134

Model Sequence

Comments

Domain	Eukaryota
Family	Rhabditidae
Species (Full Name)	Caenorhabditis elegans
PFAM codes	PF00438, PF02772, PF02773
InterPro codes	IPR002133, IPR022628, IPR022629, IPR022630, IPR022631, IPR022636
PDB structures (whole Protein)	-

P50306F1

AF4

Model Sequence

AF1-Knot

Model Sequence