Q2S127F1

DNA polymerase (EC 2.7.7.7)
AF4
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Information
Protein name
DNA polymerase (EC 2.7.7.7)
Main knot
63 (63%)
Global pLDDT
80.83
Species
Salinibacter ruber
UniProt
Structure Prediction Model
AlphaFold v4:  Q2S127
PDB structures
-
Model length
1162
AlphaFold deposition date
2022-06-01
AlphaKnot deposition date
2023-01-27
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Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
78.2 310-910 601 1-309, 911-1162 309 252
Model Sequence
MSSPPAVNTPAPADATQSAADTALFGKDPMPRLVDVHPMMDRPSNEPARVRVYQRSEDFASIHEQEDTFFPFFFLSDFSLLADRYRNGDVHTATPLNGDNFYQYLLTFETWSDYWDALRQVEHRSDSDQQAPDELYRVGSPAQQYLMQTGRSCLLGMTLDDLHRLQLDIEVYSEGSFPNADRPDDKVIIVALSDNRGWDEVLHLRDGIGEEQLLQELVYVLQERDPDVIEGHNIFEFDLAYLLDRCALHGVDFAIGRDGSVPRTYDSSMRFAERTVDYPAVDIVGRHVIDTYFQVMSFDVFSRDLPDYSLKTAARYFDLAPEERTYIEGTEIAKAWRTDRATLLEYALDDVIETKRLAGHLSGSTFYLAQMLPMTYGSSARRGPAGKIESLFVREYLRRRHALPRSEWGSQSMGGYTDIFITGVLGPIVYADVESLYPSIMLNYDVQPSGDTLDLFPQLLERLTDLRLKTKQDMKDAEEEEVRSELDARQSSYKVLINCFDPETEVVTVDGIRHVEEIEVGDRVYSLNPDTGAVEIKPVTATQSQHYAGPMVEIKNQHTDFLVTPNHRFLTQRFTSGEYTDLEWETAGDMLGDRIRRRLPSLRSLPATQERPGPISLSAVCDRLAIEHKTGPRGIKELRRQARWQPEEYELTDWLRILGWFATEGTLYKSKARQYENGNVRGVSYQTTLCQKNDIGRSEIATLLNRTGITYSSDQNDHSFCSKVLYEILEAECGSDSFSKHLPPWIFQLGPKDLKIVFDTLMQGDSAANGDRFTTSSNQLAEDFIRLAMHIGRRAFHMPNDGSHRIQVNTVRGQRPTIKPKHRQQVDYDGMIHCLTVADNHTVLAGRNRKFNWTGQSFYGLLGFGLSAFNDFEEADRVARTGQQILRQLIDEIRARGGTVIEVDTDGVLFVPPEDVRGEQAEIDYTVSLTEAMPEGIRVGFDGRFKKMLSYKKKNYALLTYDDELKFKGSSLISRSNEPFGRDFVRKAIRRLLDHDVAGLHELYVDTRDKIVNSDWEGVERFARTETLKDTLEQYEADVEAGQRPRAATYELAKEKQNRTGKPVKKGDRITYYITGDDATVTAFKHCRRAEEWDPEDPDENTAYYLKRLDEFASKFEPFFDEADFRLVFSPEDLFGFSADGIEIQREEHASDYAEDQEDVPF
Comments
Domain Bacteria
Family Rhodothermaceae
Species (Full Name) Salinibacter ruber (strain DSM 13855 / M31)
Gene SRU_1995
PFAM codes  PF00136,  PF03104
InterPro codes  IPR003587,  IPR004042,  IPR006133,  IPR006134,  IPR006141,  IPR006172,  IPR012337,  IPR023211,  IPR027434,  IPR036397,  IPR036844,  IPR042087,  IPR043502
PDB structures (whole Protein) -