| Protein name |
PAP-associated domain-containing protein
|
| Main knot |
31 (48%)
|
| Global pLDDT |
90.2
|
| Species |
Desulfovibrio alaskensis
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 Q30XD5
|
| PDB structures |
-
|
| Model length |
187
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
91.2 | 2-109 | 108 | 1-1, 110-187 | 1 | 78 |
|
Model Sequence |
MHFHLSGNAASDLKIVRFEDFSGSADAFRQHWYVHRVTMQRRKHVIVMEESTRYALLFCRVTQPFFKNFPEFFADTLWRHIVSLCAVPTARFGSIQAMTTDMCSENIYHKGLNRSVQAHIRDSFLTLECYLLHEPPINLARQEDVFQMNIRINETPRTRYGEKNYIWSLREFQRLWCEHLGVAAVRG
|
| Protein name |
PAP-associated domain-containing protein
|
| Main knot |
31 (51%)
|
| Global pLDDT |
88.33
|
| Species |
Desulfovibrio alaskensis
|
| UniProt | |
| Structure Prediction Model |
ESM v1: esmfold_v1 - nov. 2022
|
| PDB structures |
-
|
| Model length |
187
|
| ESM generation time |
2023-06-25: download the generated 3D model
|
| AlphaKnot deposition date |
2023-06-28
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
93.3 | 2-109 | 108 | 1-1, 110-187 | 1 | 78 |
|
Model Sequence |
MHFHLSGNAASDLKIVRFEDFSGSADAFRQHWYVHRVTMQRRKHVIVMEESTRYALLFCRVTQPFFKNFPEFFADTLWRHIVSLCAVPTARFGSIQAMTTDMCSENIYHKGLNRSVQAHIRDSFLTLECYLLHEPPINLARQEDVFQMNIRINETPRTRYGEKNYIWSLREFQRLWCEHLGVAAVRG
|
| Domain |
Bacteria
|
| Family |
Desulfovibrionaceae
|
| Species (Full Name) |
Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20) (Desulfovibrio alaskensis)
|
| Gene |
Dde_2866
|
| PDB structures (whole Protein) |
-
|
Q30XD5