Q54P92F1

Methionine synthase
AF4
Categories voted by users:
Information
Protein name
Methionine synthase
Main knot
10146 (42%)
Global pLDDT
87.77
Species
Dicdi
UniProt
Structure Prediction Model
AlphaFold v4:  Q54P92
PDB structures
-
Model length
1260
AlphaFold deposition date
2022-06-01
AlphaKnot deposition date
2023-01-27
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
88.0 35-1172 1138 1-34, 1173-1260 34 88
Model Sequence
MINSNDKNESDTFGIIRKILSERIMVLDGAMGTEIQKFKLKDNDYRGEEFKDFPHELGGNNDLLSLTQPHIIREIHCKYLEAGADFIETNTFNGNIFSQADYKMEHLVKRINIESARLAKSACEEYTKKDPSRPRFVCGAVGPTNKTASISPSVERPEARNVLFDELVSGYLEQVEALVEGGIDVILVETVFDSLNCKAALFAIEEFFKTYSPRLPVFVSGTIVDKSGRTLSGQTGEAFYTSVASANLMVFGLNCALGAQEMRPFLQNISKCSECYVSCYPNAGLPNTFGGYDETPEMMAEQIKEFAESGLLNIVGGCCGTSPDHIRAFCNAIEGIAPRAIPTLVPNTTLSGLEPLVFTKELNFVNVGERCNVSGSRRFANLIKANKYEEALSVARQQVEAGAQIIDINMDEGMIDAVAAIQKFLFFIGSEPEISKVPIMLDSSNFDVVEAGLKCVQGKCIVNSISLKVGEELFIKQAKIVKQYGASVVVMAFDENGQATSKEEKVRICYRSYKILTEQVGFYPQDIIFDPNILTIATGLEEHNNYGVEFIEATREIKALMPLTRVSGGVSNLSFSFRGNEPLREAMHSAFLYYAIAAGMDMGIVNAGALPIYDDIPKDLLKLVEDAILNRTNDATEKLLEYAQANNKSEKANVEVEEWRNKPVSERIAHALVKGITTYIIEDTEEARNTLPSSLSVIEGPLMGGMNVVGDLFGAGKMFLPQVIKSARVMKKAVAHLIPFMEEEKRLKRLEKGNDEAAEDEPDNAGVVVLATVKGDVHDIGKNIVGVVLGCNNYKVIDIGVMTPCEKIVEAIIANKADVVGLSGLITPSLDEMIYVASELERLKFKIPLMIGGATTSQIHTAVKISPHYSQPTVHVLDASRSVTVVQSLLDPNNKEVFAEDVSQQYAELREKHYASLKDRKYTSLEKARQHCVKVNWKTIQPVKPTFLGTQVFKEYSLEKLVTKIDWNPFFVTWQLRGKYPNRGYPRIFNDETVGAEAKKLFDDAQTMLKEIVDKKLLNARGVIGFYPANSIDEDIIIYDHNDDETRSKPIATLFGLRQQNEKETDEPYIAIGDYIAPVSSGVKDYIGLFAVSSGFGLEDMVEKYKKENDDYSSIMAKALADRLAEALAEAVHEDVRREHWAYEKDQALSNEDLFKIKYKGIRPAPGYPAQPDHTEMKTIWSLMNVNENTSIELTDHMAMLPGAAVCGVYFSHEHAKYFSVGKITKEQIESYASRKQITKEEAERWLSSILSYDRLPLVK
Comments
AF1-Artifact
Categories voted by users:
Information
Protein name
Methionine synthase
Main knot
Unknown (79%)
Knot fingerprint
K Unknown(x9) 77(x8) 31(x10)
Global pLDDT
87.77
Species
Dicdi
UniProt
Structure Prediction Model
AlphaFold v1:  Q54P92
PDB structures
-
Model length
1260
AlphaFold deposition date
2021-07-01
AlphaKnot deposition date
2021-12-18
Knot map

Knot cutoff: 48%


Help Knotting data interpretation
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
87.8 62-1084 1023 1-61, 1085-1260 61 176 Knot
87.7 25-1001 977 1-24, 1002-1260 24 259 Slipknot
87.7 59-996 938 1-58, 997-1260 58 264 Slipknot
Model Sequence
MINSNDKNESDTFGIIRKILSERIMVLDGAMGTEIQKFKLKDNDYRGEEFKDFPHELGGNNDLLSLTQPHIIREIHCKYLEAGADFIETNTFNGNIFSQADYKMEHLVKRINIESARLAKSACEEYTKKDPSRPRFVCGAVGPTNKTASISPSVERPEARNVLFDELVSGYLEQVEALVEGGIDVILVETVFDSLNCKAALFAIEEFFKTYSPRLPVFVSGTIVDKSGRTLSGQTGEAFYTSVASANLMVFGLNCALGAQEMRPFLQNISKCSECYVSCYPNAGLPNTFGGYDETPEMMAEQIKEFAESGLLNIVGGCCGTSPDHIRAFCNAIEGIAPRAIPTLVPNTTLSGLEPLVFTKELNFVNVGERCNVSGSRRFANLIKANKYEEALSVARQQVEAGAQIIDINMDEGMIDAVAAIQKFLFFIGSEPEISKVPIMLDSSNFDVVEAGLKCVQGKCIVNSISLKVGEELFIKQAKIVKQYGASVVVMAFDENGQATSKEEKVRICYRSYKILTEQVGFYPQDIIFDPNILTIATGLEEHNNYGVEFIEATREIKALMPLTRVSGGVSNLSFSFRGNEPLREAMHSAFLYYAIAAGMDMGIVNAGALPIYDDIPKDLLKLVEDAILNRTNDATEKLLEYAQANNKSEKANVEVEEWRNKPVSERIAHALVKGITTYIIEDTEEARNTLPSSLSVIEGPLMGGMNVVGDLFGAGKMFLPQVIKSARVMKKAVAHLIPFMEEEKRLKRLEKGNDEAAEDEPDNAGVVVLATVKGDVHDIGKNIVGVVLGCNNYKVIDIGVMTPCEKIVEAIIANKADVVGLSGLITPSLDEMIYVASELERLKFKIPLMIGGATTSQIHTAVKISPHYSQPTVHVLDASRSVTVVQSLLDPNNKEVFAEDVSQQYAELREKHYASLKDRKYTSLEKARQHCVKVNWKTIQPVKPTFLGTQVFKEYSLEKLVTKIDWNPFFVTWQLRGKYPNRGYPRIFNDETVGAEAKKLFDDAQTMLKEIVDKKLLNARGVIGFYPANSIDEDIIIYDHNDDETRSKPIATLFGLRQQNEKETDEPYIAIGDYIAPVSSGVKDYIGLFAVSSGFGLEDMVEKYKKENDDYSSIMAKALADRLAEALAEAVHEDVRREHWAYEKDQALSNEDLFKIKYKGIRPAPGYPAQPDHTEMKTIWSLMNVNENTSIELTDHMAMLPGAAVCGVYFSHEHAKYFSVGKITKEQIESYASRKQITKEEAERWLSSILSYDRLPLVK
Comments
Domain Eukaryota
Family Dictyosteliaceae
Species (Full Name) Dictyostelium discoideum
PFAM codes  PF00809,  PF02310,  PF02574,  PF02607,  PF02965
InterPro codes  IPR000489,  IPR003726,  IPR003759,  IPR004223,  IPR006158,  IPR011005,  IPR011822,  IPR033706,  IPR036589,  IPR036594,  IPR036724,  IPR037010
PDB structures (whole Protein) -
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