Q57977F1

Ribosomal RNA small subunit methyltransferase Nep1
AF4
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Information
Protein name
Ribosomal RNA small subunit methyltransferase Nep1
Main knot
31 (75%)
Global pLDDT
96.82
Species
Metja
UniProt
Structure Prediction Model
AlphaFold v4:  Q57977
PDB structures
Structures in KnotProt
Model length
205
AlphaFold deposition date
2022-06-01
AlphaKnot deposition date
2023-01-27
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
96.9 140-184 45 1-139, 185-205 139 21
Model Sequence
MTYNIILAKSALELIPEEIKNKIRKSRVYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNILDSPINHEKKLNIYIHTYDDKVLKINPETRLPRNYFRFLGVMEKVLKGERNHLIKMEEKTLEDLLNEINAKKIAIMTKTGKLTHPKLLKEYDTFIIGGFPYGKLKINKEKVFGDIKEISIYNKGLMAWTVCGIICYSLSF
Comments
AF1-Knot
Categories voted by users:
Information
Protein name
Ribosomal RNA small subunit methyltransferase Nep1
Main knot
31 (76%)
Knot fingerprint
K 31
Global pLDDT
96.82
Species
Metja
UniProt
Structure Prediction Model
AlphaFold v1:  Q57977
PDB structures
Structures in KnotProt
Model length
205
AlphaFold deposition date
2021-07-01
AlphaKnot deposition date
2021-12-18
Knot map

Knot cutoff: 48%


Help Knotting data interpretation
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
97.0 140-182 43 1-139, 183-205 139 23
Model Sequence
MTYNIILAKSALELIPEEIKNKIRKSRVYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNILDSPINHEKKLNIYIHTYDDKVLKINPETRLPRNYFRFLGVMEKVLKGERNHLIKMEEKTLEDLLNEINAKKIAIMTKTGKLTHPKLLKEYDTFIIGGFPYGKLKINKEKVFGDIKEISIYNKGLMAWTVCGIICYSLSF
Comments
ESM1
Categories voted by users:
Information
Protein name
Ribosomal RNA small subunit methyltransferase Nep1
Main knot
31 (81%)
Global pLDDT
87.64
Species
Metja
UniProt
Structure Prediction Model
PDB structures
Structures in KnotProt
Model length
205
ESM generation time
AlphaKnot deposition date
2023-06-28
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
78.9 140-184 45 1-139, 185-205 139 21
Model Sequence
MTYNIILAKSALELIPEEIKNKIRKSRVYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNILDSPINHEKKLNIYIHTYDDKVLKINPETRLPRNYFRFLGVMEKVLKGERNHLIKMEEKTLEDLLNEINAKKIAIMTKTGKLTHPKLLKEYDTFIIGGFPYGKLKINKEKVFGDIKEISIYNKGLMAWTVCGIICYSLSF
Comments
Domain Eukaryota
Family Methanocaldococcaceae
Species (Full Name) Methanocaldococcus jannaschii
PFAM codes  PF03587
InterPro codes  IPR005304,  IPR023503,  IPR029026,  IPR029028
PDB structures (whole Protein)  3BBD A/B: 1-205  3BBE A/B: 1-205  3BBH A/B: 1-205
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similar chains with experimentally solved models (PDB) in the AlphaKnot 2.0 database (?% sequence similarity)
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similar chains with experimentally solved models not found in AlphaKnot 2.0 database but found in thePDB database (?% sequence similarity)

  
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