Q59034F1

tRNA (pseudouridine(54)-N(1))-methyltransferase
AF4
Categories voted by users:
Information
Protein name
tRNA (pseudouridine(54)-N(1))-methyltransferase
Main knot
31 (84%)
Global pLDDT
97.76
Species
Metja
UniProt
Structure Prediction Model
AlphaFold v4:  Q59034
PDB structures
Structures in KnotProt
Model length
205
AlphaFold deposition date
2022-06-01
AlphaKnot deposition date
2023-01-27
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
97.2 135-178 44 1-134, 179-205 134 27
Model Sequence
MREFIFKANKTITSSDINLKDLPGSCGRLDLLCRCVSDAFFLSHDIRRDVVFYAVLYGQPNPPVCIKFVGSELKKVSPDERNIAIFIKKALKKFEELDEEQRKDWNQSTPGIYVRRLGFRNLVLEKLEEGKNIYYLHMNGEDVENVDIENPVFIIGDHIGIGEEDERFLDEIKAKRISLSPLELHANHCITIIHNVLDKKRICEI
Comments
AF1-Knot
Categories voted by users:
Information
Protein name
tRNA (pseudouridine(54)-N(1))-methyltransferase
Main knot
31 (86%)
Knot fingerprint
K 31
Global pLDDT
97.76
Species
Metja
UniProt
Structure Prediction Model
AlphaFold v1:  Q59034
PDB structures
Structures in KnotProt
Model length
205
AlphaFold deposition date
2021-07-01
AlphaKnot deposition date
2021-12-18
Knot map

Knot cutoff: 48%


Help Knotting data interpretation
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
97.3 135-176 42 1-134, 177-205 134 29
Model Sequence
MREFIFKANKTITSSDINLKDLPGSCGRLDLLCRCVSDAFFLSHDIRRDVVFYAVLYGQPNPPVCIKFVGSELKKVSPDERNIAIFIKKALKKFEELDEEQRKDWNQSTPGIYVRRLGFRNLVLEKLEEGKNIYYLHMNGEDVENVDIENPVFIIGDHIGIGEEDERFLDEIKAKRISLSPLELHANHCITIIHNVLDKKRICEI
Comments
ESM1
Categories voted by users:
Information
Protein name
tRNA (pseudouridine(54)-N(1))-methyltransferase
Main knot
31 (84%)
Global pLDDT
87.69
Species
Metja
UniProt
Structure Prediction Model
PDB structures
Structures in KnotProt
Model length
205
ESM generation time
AlphaKnot deposition date
2023-06-28
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
89.4 135-178 44 1-134, 179-205 134 27
Model Sequence
MREFIFKANKTITSSDINLKDLPGSCGRLDLLCRCVSDAFFLSHDIRRDVVFYAVLYGQPNPPVCIKFVGSELKKVSPDERNIAIFIKKALKKFEELDEEQRKDWNQSTPGIYVRRLGFRNLVLEKLEEGKNIYYLHMNGEDVENVDIENPVFIIGDHIGIGEEDERFLDEIKAKRISLSPLELHANHCITIIHNVLDKKRICEI
Comments
Domain Eukaryota
Family Methanocaldococcaceae
Species (Full Name) Methanocaldococcus jannaschii
PFAM codes  PF04013
InterPro codes  IPR007158,  IPR029026,  IPR029028
PDB structures (whole Protein)  3AI9 X: 1-205  3AIA A/B: 1-205
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similar chains with experimentally solved models (PDB) in the AlphaKnot 2.0 database (?% sequence similarity)
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similar chains with experimentally solved models not found in AlphaKnot 2.0 database but found in thePDB database (?% sequence similarity)

  
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