Q6AVD0F1

Probable metal-nicotianamine transporter YSL3
AF4
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Information
Protein name
Probable metal-nicotianamine transporter YSL3
Main knot
52 (74%)
Global pLDDT
87.89
Species
Orysj
UniProt
Structure Prediction Model
AlphaFold v4:  Q6AVD0
PDB structures
-
Structure in AlphaLasso
  Q6AVD0: LS2++N
Model length
683
AlphaFold deposition date
2022-06-01
AlphaKnot deposition date
2023-01-27
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
90.0 111-639 529 1-110, 640-683 110 44
Model Sequence
MDAMIGDPMSATSVEAVFEKQPSPEFRELVTPRAMAVAVVLSVVICFVGMRIQMTAGIVPALNMPASILSFFLLKWLIRLLQSCGFPMLPFTRQENMFLLTCIITCLNLALTSGFATNIIGMTSTVARSLADDPDPRDIMDHVPIGKWIVYLFLVGMTGVLINVPFNQVMIIDYKLLFPTGTVIAQLINSFHTPEGAYVAKMQVATIFKVFFGSFSWSMFQWFYTAGDDCGFQHFPTFGLGLYKHRFYFDFSATYIGLGMICPHIVNFGLFFGAIISWGFLYPFLETKRGQWYQTDSPTSLNGQNGYKVFISVTLIITDGMINFLTLITTASINFYQLRKEHDLGLANYFKKHPSLNYDDRKRIEVFLANRIPIPVPVAAYITCAAISTIAIPAMFNQIKFYHLAVLYMVIPVVTFCNTYATGLTDWSVAPTYAKFTTFVFAAWIAKPGAVVASLLASGVIVAALHISSQAMQDLKSGHMTLTSPRAMVTGQIFGVAVGSILCPCVFLAFQSTTKPNAPVGSKQSDYPCPFAGLYRAIGVIGTGGVKELPKHCMTFCVVAFCVTVIIDAVVLVSQKRGWSIHRYIPSMTVIALPFFAGSYFTIDMCVGSLLLLAWTRMNAKSAEMLSSAVAAGLICGEGLFTLPSALLNMFKVQPPMCMKFLSGGEEVEAADSFLNNLGTSRT
Comments
AF1-Knot
Categories voted by users:
Information
Protein name
Probable metal-nicotianamine transporter YSL3
Main knot
52 (75%)
Knot fingerprint
K 52 31 31
Global pLDDT
87.89
Species
Orysj
UniProt
Structure Prediction Model
AlphaFold v1:  Q6AVD0
PDB structures
-
Structure in AlphaLasso
  Q6AVD0: LS2++N
Model length
683
AlphaFold deposition date
2021-07-01
AlphaKnot deposition date
2021-12-18
Knot map

Knot cutoff: 48%


Help Knotting data interpretation
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Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
90.0 109-636 528 1-108, 637-683 108 47 Knot
90.0 102-596 495 1-101, 597-683 101 87 Slipknot
Model Sequence
MDAMIGDPMSATSVEAVFEKQPSPEFRELVTPRAMAVAVVLSVVICFVGMRIQMTAGIVPALNMPASILSFFLLKWLIRLLQSCGFPMLPFTRQENMFLLTCIITCLNLALTSGFATNIIGMTSTVARSLADDPDPRDIMDHVPIGKWIVYLFLVGMTGVLINVPFNQVMIIDYKLLFPTGTVIAQLINSFHTPEGAYVAKMQVATIFKVFFGSFSWSMFQWFYTAGDDCGFQHFPTFGLGLYKHRFYFDFSATYIGLGMICPHIVNFGLFFGAIISWGFLYPFLETKRGQWYQTDSPTSLNGQNGYKVFISVTLIITDGMINFLTLITTASINFYQLRKEHDLGLANYFKKHPSLNYDDRKRIEVFLANRIPIPVPVAAYITCAAISTIAIPAMFNQIKFYHLAVLYMVIPVVTFCNTYATGLTDWSVAPTYAKFTTFVFAAWIAKPGAVVASLLASGVIVAALHISSQAMQDLKSGHMTLTSPRAMVTGQIFGVAVGSILCPCVFLAFQSTTKPNAPVGSKQSDYPCPFAGLYRAIGVIGTGGVKELPKHCMTFCVVAFCVTVIIDAVVLVSQKRGWSIHRYIPSMTVIALPFFAGSYFTIDMCVGSLLLLAWTRMNAKSAEMLSSAVAAGLICGEGLFTLPSALLNMFKVQPPMCMKFLSGGEEVEAADSFLNNLGTSRT
Comments
Domain Eukaryota
Family Poaceae
Species (Full Name) Oryza sativa
PFAM codes  PF03169
InterPro codes  IPR004813,  IPR045035
PDB structures (whole Protein) -
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