Q92979F1

Ribosomal RNA small subunit methyltransferase NEP1
AF4
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Information
Protein name
Ribosomal RNA small subunit methyltransferase NEP1
Main knot
31 (82%)
Global pLDDT
88.37
Species
Human
UniProt
Structure Prediction Model
AlphaFold v4:  Q92979
PDB structures
Structures in KnotProt
Model length
244
AlphaFold deposition date
2022-06-01
AlphaKnot deposition date
2023-01-27
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
95.3 175-218 44 1-174, 219-244 174 26
Model Sequence
MAAPSDGFKPRERSGGEQAQDWDALPPKRPRLGAGNKIGGRRLIVVLEGASLETVKVGKTYELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKVGTSFSIPVVSDVRELVPSSDPIVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKLTTAFEEVWGVI
Comments
AF1-Knot
Categories voted by users:
Information
Protein name
Ribosomal RNA small subunit methyltransferase NEP1
Main knot
31 (84%)
Knot fingerprint
K 31
Global pLDDT
88.0
Species
Human
UniProt
Structure Prediction Model
AlphaFold v1:  Q92979
PDB structures
Structures in KnotProt
Model length
244
AlphaFold deposition date
2021-07-01
AlphaKnot deposition date
2021-12-18
Knot map

Knot cutoff: 48%


Help Knotting data interpretation
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
95.4 175-216 42 1-174, 217-244 174 28
Model Sequence
MAAPSDGFKPRERSGGEQAQDWDALPPKRPRLGAGNKIGGRRLIVVLEGASLETVKVGKTYELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKVGTSFSIPVVSDVRELVPSSDPIVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKLTTAFEEVWGVI
Comments
ESM1
Categories voted by users:
Information
Protein name
Ribosomal RNA small subunit methyltransferase NEP1
Main knot
31 (88%)
Global pLDDT
88.9
Species
Human
UniProt
Structure Prediction Model
PDB structures
Structures in KnotProt
Model length
244
ESM generation time
AlphaKnot deposition date
2023-06-28
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
60.8 175-218 44 1-174, 219-244 174 26
Model Sequence
MAAPSDGFKPRERSGGEQAQDWDALPPKRPRLGAGNKIGGRRLIVVLEGASLETVKVGKTYELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKVGTSFSIPVVSDVRELVPSSDPIVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKLTTAFEEVWGVI
Comments
Domain Eukaryota
Family Hominidae
Species (Full Name) Homo sapiens
PFAM codes  PF03587
InterPro codes  IPR005304,  IPR029026,  IPR029028
PDB structures (whole Protein)  5FAI A: 14-244  7MQ8 SJ/SK: 1-244  7MQ9 SJ/SK: 1-244  7MQA SJ/SK: 1-244
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similar chains with experimentally solved models (PDB) in the AlphaKnot 2.0 database (?% sequence similarity)
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similar chains with experimentally solved models not found in AlphaKnot 2.0 database but found in thePDB database (?% sequence similarity)

  
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