| Protein name |
39S ribosomal protein L37, mitochondrial
|
| Main knot |
31 (59%)
|
| Global pLDDT |
90.1
|
| Species |
Human
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 Q9BZE1
|
| PDB structures |
 3J7Y 5 3J9M 5 5OOL 5 5OOM 5 6I9R 5 6NU2 5 6NU3 5 6VLZ 5 6VMI 5 6ZM5 5 6ZM6 5 6ZS9 5 6ZSA 5 6ZSB 5 6ZSC 5 6ZSD 5 6ZSE 5 6ZSG 5 7A5F 53 7A5G 53 7A5H 5 7A5I 53 7A5J 5 7A5K 53 7L08 5 7L20 5 7O9K 5 7O9M 5 7ODR 5 7ODS 5 7ODT 5 7OF0 5 7OF2 5 7OF3 5 7OF4 5 7OF5 5 7OF6 5 7OF7 5 7OG4 5 7OI6 5 7OI7 5 7OI8 5 7OI9 5 7OIA 5 7OIB 5 7OIC 5 7OID 5 7OIE 5 7PD3 5 7PO4 5 7QH6 5 7QH7 5 7QI4 5
|
| Structures in KnotProt | |
| Model length |
423
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
Knot cutoff: 48%
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | Slipknot tails | Slipknot loops | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
93.7 | 103-418 | 316 | 1-102, 419-423 |
|
Model Sequence |
MALASGPARRALAGSGQLGLGGFGAPRRGAYEWGVRSTRKSEPPPLDRVYEIPGLEPITFAGKMHFVPWLARPIFPPWDRGYKDPRFYRSPPLHEHPLYKDQACYIFHHRCRLLEGVKQALWLTKTKLIEGLPEKVLSLVDDPRNHIENQDECVLNVISHARLWQTTEEIPKRETYCPVIVDNLIQLCKSQILKHPSLARRICVQNSTFSATWNRESLLLQVRGSGGARLSTKDPLPTIASREEIEATKNHVLETFYPISPIIDLHECNIYDVKNDTGFQEGYPYPYPHTLYLLDKANLRPHRLQPDQLRAKMILFAFGSALAQARLLYGNDAKVLEQPVVVQSVGTDGRVFHFLVFQLNTTDLDCNEGVKNLAWVDSDQLLYQHFWCLPVIKKRVVVEPVGPVGFKPETFRKFLALYLHGAA
|
|
|
| Protein name |
39S ribosomal protein L37, mitochondrial
|
| Main knot |
31 (50%)
|
| Knot fingerprint |
K 31 31 31
|
| Global pLDDT |
89.2
|
| Species |
Human
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v1:
Q9BZE1
|
| PDB structures | |
| Structures in KnotProt | |
| Model length |
423
|
| AlphaFold deposition date |
2021-07-01
|
| AlphaKnot deposition date |
2021-12-18
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | Slipknot tails | Slipknot loops | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
92.7 | 102-418 | 317 | 1-101, 419-423 |
|
Model Sequence |
MALASGPARRALAGSGQLGLGGFGAPRRGAYEWGVRSTRKSEPPPLDRVYEIPGLEPITFAGKMHFVPWLARPIFPPWDRGYKDPRFYRSPPLHEHPLYKDQACYIFHHRCRLLEGVKQALWLTKTKLIEGLPEKVLSLVDDPRNHIENQDECVLNVISHARLWQTTEEIPKRETYCPVIVDNLIQLCKSQILKHPSLARRICVQNSTFSATWNRESLLLQVRGSGGARLSTKDPLPTIASREEIEATKNHVLETFYPISPIIDLHECNIYDVKNDTGFQEGYPYPYPHTLYLLDKANLRPHRLQPDQLRAKMILFAFGSALAQARLLYGNDAKVLEQPVVVQSVGTDGRVFHFLVFQLNTTDLDCNEGVKNLAWVDSDQLLYQHFWCLPVIKKRVVVEPVGPVGFKPETFRKFLALYLHGAA
|
| Domain |
Eukaryota
|
| Family |
Hominidae
|
| Species (Full Name) |
Homo sapiens
|
| PFAM codes |
PF07147
|
| InterPro codes |
 IPR010793
|
| PDB structures (whole Protein) |
3J7Y 5: 1-423 3J9M 5: 1-423 5OOL 5: 1-423 5OOM 5: 1-423 6I9R 5: 1-423 6NU2 5: 31-422 6NU3 5: 30-423 6VLZ 5: 1-423 6VMI 5: 1-423 6ZM5 5: 1-423 6ZM6 5: 1-423 6ZS9 5: 1-423 6ZSA 5: 1-423 6ZSB 5: 1-423 6ZSC 5: 1-423 6ZSD 5: 1-423 6ZSE 5: 1-423 6ZSG 5: 1-423 7A5F 53: 1-423 7A5G 53: 1-423 7A5H 5: 1-423 7A5I 53: 1-423 7A5J 5: 1-423 7A5K 53: 1-423 7L08 5: 1-423 7L20 5: 1-423 7O9K 5: 1-423 7O9M 5: 1-423 7ODR 5: 1-423 7ODS 5: 1-423 7ODT 5: 1-423 7OF0 5: 1-423 7OF2 5: 1-423 7OF3 5: 1-423 7OF4 5: 1-423 7OF5 5: 1-423 7OF6 5: 1-423 7OF7 5: 1-423 7OG4 5: 1-423 7OI6 5: 1-423 7OI7 5: 1-423 7OI8 5: 1-423 7OI9 5: 1-423 7OIA 5: 1-423 7OIB 5: 1-423 7OIC 5: 1-423 7OID 5: 1-423 7OIE 5: 1-423 7PD3 5: 1-423 7PO4 5: 1-423 7QH6 5: 1-423 7QH7 5: 31-422 7QI4 5: 1-423
|
#similar chains with experimentally solved models (PDB) in the AlphaKnot 2.0 database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains with experimentally solved models not found in AlphaKnot 2.0 database but found in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
| Structure ID | Identity | Length | AF4 Model Topology | ESM Model Topology | Organism | Link |
|---|---|---|---|---|---|---|
|
Q9BZE1
|
99.9 %
|
423
|
31 (59%)
|
N/A
|
Human
|
|
|
A0A6D2XYJ9
|
99.4 %
|
422
|
31 (54%)
|
N/A
|
Chimpanzee
|
|
|
A0A2R9C6B6
|
99.2 %
|
422
|
31 (53%)
|
N/A
|
Pygmy chimpanzee
|
|
|
K7DEP4
|
99.2 %
|
422
|
31 (53%)
|
N/A
|
Chimpanzee
|
|
|
A0A2J8V921
|
98.2 %
|
422
|
31 (54%)
|
N/A
|
Sumatran orangutan
|
|
|
G1QT17
|
96.7 %
|
422
|
31 (53%)
|
N/A
|
Northern white-cheeked gibbon
|
|
|
S4R369
|
99.7 %
|
399
|
31 (88%)
|
N/A
|
Human
|
|
|
A0A2K6CR64
|
94.8 %
|
422
|
31 (55%)
|
N/A
|
Pig-tailed macaque
|
|
|
A0A096N932
|
94.7 %
|
422
|
31 (55%)
|
N/A
|
Olive baboon
|
|
|
A0A2K5WSP6
|
94.6 %
|
422
|
31 (55%)
|
N/A
|
Crab-eating macaque
|
|
|
A0A2K6PGP1
|
94.6 %
|
422
|
31 (54%)
|
N/A
|
Golden snub-nosed monkey
|
|
|
A0A2K5XRU2
|
94.6 %
|
422
|
31 (57%)
|
N/A
|
Drill
|
|
|
A0A2K6ME39
|
94.6 %
|
422
|
31 (52%)
|
N/A
|
Black snub-nosed monkey
|
|
|
A0A2K5P0M0
|
94.5 %
|
422
|
31 (55%)
|
N/A
|
Sooty mangabey
|
|
|
A0A0D9S773
|
94.4 %
|
422
|
31 (53%)
|
N/A
|
Green monkey
|
|
|
A0A2K5IQU3
|
94.3 %
|
422
|
31 (54%)
|
N/A
|
Peters' Angolan colobus
|
|
|
A0A2I3S9T4
|
99.0 %
|
399
|
31 (82%)
|
N/A
|
Chimpanzee
|
|
|
A0A2R9CGL7
|
98.9 %
|
399
|
31 (85%)
|
N/A
|
Pygmy chimpanzee
|
|
|
A0A2I2YDW4
|
98.5 %
|
399
|
31 (82%)
|
N/A
|
Western lowland gorilla
|
|
|
A0A2J8V916
|
97.8 %
|
399
|
31 (81%)
|
N/A
|
Sumatran orangutan
|
|
|
A0A2K5D8M1
|
92.6 %
|
422
|
31 (56%)
|
N/A
|
Ma's night monkey
|
|
|
F7HDI3
|
91.6 %
|
422
|
31 (51%)
|
N/A
|
White-tufted-ear marmoset
|
|
|
M3ZBH9
|
96.2 %
|
399
|
31 (81%)
|
N/A
|
Northern white-cheeked gibbon
|
|
|
A0A6J3JF82
|
91.7 %
|
421
|
31 (54%)
|
N/A
|
Brown-capped capuchin
|
|
|
A0A2K5S0I8
|
91.2 %
|
421
|
31 (55%)
|
N/A
|
Panamanian white-faced capuchin
|
|
|
A0A2K6T405
|
90.3 %
|
422
|
31 (51%)
|
N/A
|
Bolivian squirrel monkey
|
|
|
F7D783
|
94.7 %
|
398
|
31 (83%)
|
N/A
|
Rhesus macaque
|
|
|
F7H0G3
|
94.7 %
|
398
|
31 (59%)
|
N/A
|
Rhesus macaque
|
|
|
A0A2K6CR22
|
94.5 %
|
399
|
31 (81%)
|
N/A
|
Pig-tailed macaque
|
|
|
A0A2K5WSP1
|
94.4 %
|
398
|
31 (80%)
|
N/A
|
Crab-eating macaque
|
|
|
A0A4X1WCE8
|
87.7 %
|
422
|
31 (54%)
|
N/A
|
Pig
|
|
|
A0A480SLQ8
|
87.7 %
|
422
|
31 (53%)
|
N/A
|
Pig
|
|
|
A0A287BIV6
|
87.6 %
|
422
|
31 (56%)
|
N/A
|
Pig
|
|
|
L9KZU9
|
87.6 %
|
422
|
31 (49%)
|
N/A
|
Chinese tree shrew
|
|
|
A0A2K5D8N9
|
91.9 %
|
399
|
31 (79%)
|
N/A
|
Ma's night monkey
|
|
|
A0A1U7V432
|
87.4 %
|
422
|
31 (55%)
|
N/A
|
Philippine tarsier
|
|
|
A0A7J7ZYS9
|
86.9 %
|
440
|
31 (54%)
|
N/A
|
Greater mouse-eared bat
|
|
|
A0A7J7ZZ59
|
86.9 %
|
469
|
31 (51%)
|
N/A
|
Greater mouse-eared bat
|
|
|
G1P9X9
|
86.8 %
|
422
|
31 (48%)
|
N/A
|
Little brown bat
|
|
|
G1T120
|
86.6 %
|
422
|
31 (53%)
|
N/A
|
Rabbit
|
|
|
M3WQ36
|
86.6 %
|
422
|
31 (54%)
|
N/A
|
Cat
|
|
|
F7IMU9
|
90.9 %
|
399
|
31 (83%)
|
N/A
|
White-tufted-ear marmoset
|
|
|
A0A7J7F5U9
|
86.5 %
|
422
|
31 (55%)
|
N/A
|
South-central black rhinoceros
|
|
|
A0A485MG83
|
86.3 %
|
422
|
31 (59%)
|
N/A
|
Iberian lynx
|
|
|
L5LLB6
|
86.3 %
|
422
|
31 (50%)
|
N/A
|
David's myotis
|
|
|
A0A6I9ZTV4
|
86.2 %
|
422
|
31 (51%)
|
N/A
|
Cheetah
|
|
|
A0A2K6EPJ5
|
86.1 %
|
422
|
31 (52%)
|
N/A
|
Coquerel's sifaka
|
|
|
A0A341AWX9
|
86.1 %
|
422
|
31 (54%)
|
N/A
|
Yangtze finless porpoise
|
|
|
A0A383YNQ2
|
86.1 %
|
422
|
31 (55%)
|
N/A
|
North Pacific minke whale
|
|
|
A0A6P6IRK4
|
86.1 %
|
422
|
31 (57%)
|
N/A
|
Mountain lion
|
|
|
A0A2Y9NJ53
|
86.1 %
|
422
|
31 (58%)
|
N/A
|
Beluga whale
|
|
|
A0A6P4W150
|
85.9 %
|
422
|
31 (50%)
|
N/A
|
Leopard
|
|
|
A0A340YIF9
|
85.9 %
|
422
|
31 (54%)
|
N/A
|
Yangtze river dolphin
|
|
|
A0A250YHZ1
|
85.9 %
|
421
|
31 (52%)
|
N/A
|
American beaver
|
|
|
A0A484GN37
|
85.9 %
|
422
|
31 (55%)
|
N/A
|
Indo-pacific humpbacked dolphin
|
|
|
A0A091CPI0
|
85.7 %
|
423
|
31 (52%)
|
N/A
|
Damaraland mole rat
|
|
|
A0A2U4BJB3
|
85.8 %
|
422
|
31 (54%)
|
N/A
|
Atlantic bottle-nosed dolphin
|
|
|
A0A6P3QZ14
|
85.8 %
|
422
|
31 (49%)
|
N/A
|
Large flying fox
|
|
|
A0A6I9I376
|
85.8 %
|
422
|
31 (51%)
|
N/A
|
Alpaca
|
|
|
L5K6R2
|
85.8 %
|
422
|
31 (57%)
|
N/A
|
Black flying fox
|
|
|
A0A6I9J7K7
|
85.5 %
|
422
|
31 (54%)
|
N/A
|
Cape golden mole
|
|
|
A0A834PYD1
|
85.4 %
|
435
|
31 (53%)
|
N/A
|
Woodchuck
|
|
|
A0A5E4BDI1
|
85.3 %
|
435
|
31 (54%)
|
N/A
|
Woodchuck
|
|
|
K9IJT9
|
85.3 %
|
422
|
31 (81%)
|
N/A
|
Vampire bat
|
|
|
G5C9M1
|
85.1 %
|
423
|
31 (51%)
|
N/A
|
Naked mole rat
|
|
|
A0A6P3FM13
|
85.2 %
|
422
|
31 (55%)
|
N/A
|
Degu
|
|
|
A0A5N4DBX2
|
85.2 %
|
422
|
31 (54%)
|
N/A
|
Dromedary
|
|
|
A0A671E2K3
|
85.2 %
|
422
|
31 (79%)
|
N/A
|
Greater horseshoe bat
|
|
|
A0A2K6T3Z7
|
89.4 %
|
399
|
31 (82%)
|
N/A
|
Bolivian squirrel monkey
|
|
|
A0A7J8KCN0
|
85.1 %
|
422
|
31 (52%)
|
N/A
|
Egyptian rousette
|
|
|
A0A6G1AES1
|
85.1 %
|
422
|
31 (51%)
|
N/A
|
Spotted hyena
|
|
|
A0A7J8A973
|
85.1 %
|
427
|
31 (54%)
|
N/A
|
Kuhl's pipistrelle
|
|
|
I3N0R8
|
85.0 %
|
453
|
31 (49%)
|
N/A
|
Thirteen-lined ground squirrel
|
|
|
A0A7J8F9W2
|
84.8 %
|
422
|
31 (53%)
|
N/A
|
Pallas' mastiff bat
|
|
|
A0A2Y9DBV7
|
84.8 %
|
422
|
31 (55%)
|
N/A
|
Florida manatee
|
|
|
A0A6J0VU11
|
84.7 %
|
422
|
31 (52%)
|
N/A
|
Odocoileus virginianus
|
|
|
A0A6P7E5H7
|
84.7 %
|
422
|
31 (51%)
|
N/A
|
Sheep
|
|
|
A0A452EYL5
|
84.7 %
|
422
|
31 (57%)
|
N/A
|
Goat
|
|
|
A4FUC0
|
84.7 %
|
422
|
31 (56%)
|
N/A
|
Bovine
|
|
|
A0A6P5B7V7
|
84.7 %
|
422
|
31 (53%)
|
N/A
|
Zebu
|
|
|
A0A4W2G408
|
84.7 %
|
422
|
31 (56%)
|
N/A
|
Hybrid cattle
|
|
|
A0A2Y9GLF2
|
84.6 %
|
422
|
31 (53%)
|
N/A
|
Hawaiian monk seal
|
|
|
A0A6P3I3H2
|
84.6 %
|
422
|
31 (58%)
|
N/A
|
Bison bison
|
|
|
A0A6B0RMW3
|
84.6 %
|
422
|
31 (51%)
|
N/A
|
wild yak
|
|
|
A0A4W2DE61
|
84.4 %
|
422
|
31 (54%)
|
N/A
|
Hybrid cattle
|
|
|
A0A7J7ZZ40
|
76.2 %
|
493
|
31 (47%)
|
N/A
|
Greater mouse-eared bat
|
|
|
A0A2U3VY34
|
84.3 %
|
422
|
31 (56%)
|
N/A
|
Pacific walrus
|
|
|
A0A3L7I6M7
|
84.3 %
|
422
|
31 (55%)
|
N/A
|
Chinese hamster
|
|
|
A0A7J8FA48
|
83.4 %
|
427
|
31 (49%)
|
N/A
|
Pallas' mastiff bat
|
|
|
U6CRH2
|
84.2 %
|
422
|
31 (57%)
|
N/A
|
American mink
|
|
|
A0A452RZ56
|
83.9 %
|
423
|
31 (54%)
|
N/A
|
American black bear
|
|
|
L8IJN9
|
84.0 %
|
421
|
31 (52%)
|
N/A
|
wild yak
|
|
|
A0A6J2DZL5
|
84.0 %
|
422
|
31 (50%)
|
N/A
|
California sealion
|
|
|
A0A3Q7WTN5
|
83.9 %
|
422
|
31 (53%)
|
N/A
|
Ursus arctos
|
|
|
A0A384CRF5
|
83.7 %
|
423
|
31 (54%)
|
N/A
|
Polar bear
|
|
|
A0A1A6HDN9
|
83.8 %
|
422
|
31 (76%)
|
N/A
|
Desert woodrat
|
|
|
A0A673TFJ6
|
83.8 %
|
421
|
31 (55%)
|
N/A
|
Meerkat
|
|
|
G9KBC1
|
83.8 %
|
422
|
31 (50%)
|
N/A
|
European domestic ferret
|
|
|
Q921S7
|
83.9 %
|
421
|
31 (51%)
|
N/A
|
Mouse
|
|
|
Q6AXT0
|
83.7 %
|
422
|
31 (54%)
|
N/A
|
Rat
|
|
|
G1LT82
|
83.5 %
|
422
|
31 (53%)
|
N/A
|
Giant panda
|
|
|
A0A1U7QSP5
|
83.5 %
|
422
|
31 (54%)
|
N/A
|
Golden hamster
|
|
|
H0XFP1
|
83.5 %
|
422
|
31 (55%)
|
N/A
|
Small-eared galago
|
|
|
A0A1S2ZEC3
|
83.4 %
|
422
|
31 (56%)
|
N/A
|
Western European hedgehog
|
|
|
G3TBZ6
|
82.5 %
|
426
|
31 (54%)
|
N/A
|
African elephant
|
|
|
A0A2Y9J573
|
83.1 %
|
422
|
31 (54%)
|
N/A
|
Enhydra lutris
|
|
|
A0A811ZKR1
|
82.9 %
|
422
|
31 (53%)
|
N/A
|
Raccoon dog
|
|
|
A0A3Q2H0L8
|
87.0 %
|
399
|
31 (69%)
|
N/A
|
Horse
|
|
|
A0A834AIM7
|
82.8 %
|
422
|
31 (80%)
|
N/A
|
pale spear-nosed bat
|
|
|
A0A6I9L5W9
|
82.6 %
|
422
|
31 (53%)
|
N/A
|
Prairie deer mouse
|
|
|
A0A6J2LM99
|
82.6 %
|
422
|
31 (78%)
|
N/A
|
pale spear-nosed bat
|
|
|
A0A480NJN6
|
82.3 %
|
399
|
31 (57%)
|
01 (59%)
|
Pig
|
|
|
A0A822ALA7
|
83.8 %
|
414
|
31 (53%)
|
N/A
|
mimic poison frog
|
|
|
A0A5N3WCG6
|
81.8 %
|
420
|
31 (84%)
|
N/A
|
Barking deer
|
|
|
A0A212CG24
|
81.4 %
|
419
|
31 (59%)
|
N/A
|
European red deer
|
|
|
A0A5J5N689
|
81.6 %
|
420
|
31 (88%)
|
N/A
|
Reeves' muntjac
|
|
|
F6YDG8
|
88.4 %
|
431
|
31 (56%)
|
N/A
|
Horse
|
|
|
W5PAT8
|
79.9 %
|
419
|
31 (47%)
|
N/A
|
Sheep
|
|
|
A0A7J8F9T6
|
78.5 %
|
395
|
31 (51%)
|
01 (94%)
|
Pallas' mastiff bat
|
|
|
A0A7J8A8J6
|
78.4 %
|
399
|
31 (50%)
|
01 (91%)
|
Kuhl's pipistrelle
|
|
|
H2N7A8
|
78.0 %
|
345
|
31 (57%)
|
N/A
|
Sumatran orangutan
|
|
|
S9XAB2
|
81.3 %
|
396
|
31 (63%)
|
N/A
|
Wild bactrian camel
|
|
|
A0A452FMX9
|
82.1 %
|
405
|
31 (54%)
|
N/A
|
Goat
|
|
|
A0A480UEG3
|
88.1 %
|
359
|
31 (54%)
|
31 (48%)
|
Pig
|
|
|
A0A7J7ZZD8
|
87.5 %
|
359
|
31 (57%)
|
31 (49%)
|
Greater mouse-eared bat
|
|
|
A0A6A1Q8C6
|
85.4 %
|
367
|
31 (90%)
|
N/A
|
Fin whale
|
|
|
A0A452EYP6
|
74.1 %
|
415
|
31 (51%)
|
N/A
|
Goat
|
|
|
M3Y5N8
|
84.9 %
|
359
|
31 (51%)
|
31 (52%)
|
European domestic ferret
|
|
|
G3GTL7
|
81.1 %
|
378
|
31 (59%)
|
N/A
|
Chinese hamster
|
|
|
W5PAT3
|
71.9 %
|
420
|
31 (54%)
|
N/A
|
Sheep
|
|
|
A0A4X2KBF1
|
73.2 %
|
425
|
31 (54%)
|
N/A
|
Common wombat
|
|
|
A0A6P5KFQ1
|
70.7 %
|
426
|
31 (53%)
|
N/A
|
Koala
|
|
|
H9H804
|
71.1 %
|
426
|
31 (51%)
|
N/A
|
Gray short-tailed opossum
|
Q9BZE1
3J7Y 5, K -3.1, -3.1, -3.1, -3.1: 1-423