Q9FFF2F1

Ubiquitin carboxyl-terminal hydrolase
AF4
Categories voted by users:
Information
Protein name
Ubiquitin carboxyl-terminal hydrolase
Main knot
52 (71%)
Global pLDDT
89.67
Species
Arath
UniProt
Structure Prediction Model
AlphaFold v4:  Q9FFF2
PDB structures
-
Model length
334
AlphaFold deposition date
2022-06-01
AlphaKnot deposition date
2023-01-27
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
88.0 4-224 221 1-3, 225-334 3 110
Model Sequence
MSWLPVESDPGIFTEIIQQMQVKGVQVEELYSLDFNSLDEIRPVYGLILLYKWRPEEKENRVVITEPNPNFFFASQIINNACATQAILSVLMNSSSIDIGSELSELKQFAKEFPPELKGLAINNNEAIRAAHNTFARPDPSSIMEDEELAAAKNLDEDDDVYHYISYLPVDGILYELDGLKEGPISLGQCLGEPEGIEWLRMVQPVVQEQIDRYSQNEIRFSLLAVVKNRKEMYVAELKEYQRKRERVLQQLGALQADKYAEKSSYEALDRELSEVNIGIETVSQKIVMEEEKSKNWKKENMRRKHNYVPFLFNFLKILADKKKLKPLIAKHHP
Comments
AF1-Knot
Categories voted by users:
Information
Protein name
Ubiquitin carboxyl-terminal hydrolase
Main knot
52 (65%)
Knot fingerprint
K 52
Global pLDDT
89.67
Species
Arath
UniProt
Structure Prediction Model
AlphaFold v1:  Q9FFF2
PDB structures
-
Model length
334
AlphaFold deposition date
2021-07-01
AlphaKnot deposition date
2021-12-18
Knot map

Knot cutoff: 48%


Help Knotting data interpretation
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
88.4 6-227 222 1-5, 228-334 5 107
Model Sequence
MSWLPVESDPGIFTEIIQQMQVKGVQVEELYSLDFNSLDEIRPVYGLILLYKWRPEEKENRVVITEPNPNFFFASQIINNACATQAILSVLMNSSSIDIGSELSELKQFAKEFPPELKGLAINNNEAIRAAHNTFARPDPSSIMEDEELAAAKNLDEDDDVYHYISYLPVDGILYELDGLKEGPISLGQCLGEPEGIEWLRMVQPVVQEQIDRYSQNEIRFSLLAVVKNRKEMYVAELKEYQRKRERVLQQLGALQADKYAEKSSYEALDRELSEVNIGIETVSQKIVMEEEKSKNWKKENMRRKHNYVPFLFNFLKILADKKKLKPLIAKHHP
Comments
ESM1
Categories voted by users:
Information
Protein name
Ubiquitin carboxyl-terminal hydrolase
Main knot
52 (70%)
Global pLDDT
88.74
Species
Arath
UniProt
Structure Prediction Model
PDB structures
-
Model length
334
ESM generation time
AlphaKnot deposition date
2023-06-28
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
90.7 1-334 334 0 0
Model Sequence
MSWLPVESDPGIFTEIIQQMQVKGVQVEELYSLDFNSLDEIRPVYGLILLYKWRPEEKENRVVITEPNPNFFFASQIINNACATQAILSVLMNSSSIDIGSELSELKQFAKEFPPELKGLAINNNEAIRAAHNTFARPDPSSIMEDEELAAAKNLDEDDDVYHYISYLPVDGILYELDGLKEGPISLGQCLGEPEGIEWLRMVQPVVQEQIDRYSQNEIRFSLLAVVKNRKEMYVAELKEYQRKRERVLQQLGALQADKYAEKSSYEALDRELSEVNIGIETVSQKIVMEEEKSKNWKKENMRRKHNYVPFLFNFLKILADKKKLKPLIAKHHP
Comments
Domain Eukaryota
Family Brassicaceae
Species (Full Name) Arabidopsis thaliana
PFAM codes  PF01088,  PF18031
InterPro codes  IPR001578,  IPR017390,  IPR036959,  IPR038765,  IPR041507
PDB structures (whole Protein) -
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