Q9RZA4 | AlphaKnot 2.0

AF4

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Information

Protein name	Bacteriophytochrome (EC 2.7.13.3) (Phytochrome-like protein)
Main knot	4₁ (74%)
Global pLDDT	89.72
Species	Deinococcus radiodurans
UniProt	Q9RZA4
Structure Prediction Model	AlphaFold v4: Q9RZA4
PDB structures	1ZTU A 2O9B A 2O9C A 3S7N A 3S7O A 3S7P A 3S7Q A 4CQH A 4IJG A 4O01 A/B/C/D 4O0P A/B 4O8G A 4Q0H A 4Q0I A 4Q0J A 4Y3I A 4Y5F A 4Z1W A 4ZRR A 5AJG A 5C5K A/B/C/D 5K5B A 5L8M A 5LBR A 5MG0 A 5MG1 A 5NFX A 5NM3 A/B/C/D 5NWN A/B/C/D 6FHT A/B 6FTD A/B 6T3L A/B 6T3U A/B 7Z9D A 7Z9E A
Structures in KnotProt	1ZTU A, K 4.1, 4.1: 1-321 2O9B A, K 4.1, 4.1: 1-321 2O9C A, K 4.1, 4.1: 1-321 3S7N A, K 4.1, 4.1: 1-321 3S7O A, K 4.1, 4.1: 1-321 3S7P A, K 4.1, 4.1: 1-321 3S7Q A, K 4.1, 4.1: 1-321 4CQH A, K 4.1, 4.1: 1-317 4IJG A, K 4.1, 4.1: 7-321 4O01 A/B/C/D, K 4.1, 4.1: 1-502 4O0P A/B, K 4.1, 4.1: 1-502 4O8G A, K 4.1, 4.1: 1-321 4Q0H A, K 4.1, 4.1: 1-321 4Q0I A, K 4.1, 4.1: 1-321 4Q0J A, K 4.1, 4.1: 1-502 4Y3I A, K 4.1: 4-321 4Y5F A, K 4.1: 4-321 4Z1W A, K 4.1, 4.1: 1-321 4ZRR A, K 4.1, 4.1: 1-321 5C5K A/B/C/D, K 4.1, 4.1: 1-502 5K5B A, K 4.1, 4.1: 1-321 5L8M A, K 4.1, 4.1: 1-321 5LBR A, K 4.1, 4.1: 1-321 5MG0 A, K 4.1, 4.1: 1-321 5NFX A, K 4.1, 4.1: 1-321 5NM3 A/B/C/D, K 4.1: 1-502 5NWN A/B/C/D, K 4.1, 4.1: 1-502 6FHT A/B, K 4.1, 4.1: 3-510
Model length	755
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					90.1	1-736	736	737-755	0	19

Model Sequence

MSRDPLPFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQAALPPGCPDALQYRATLDWPAAGHLSLTVHRVGELLILEFEPTEAWDSTGPHALRNAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGGQLWGLIACHHQTPYVLPPDLRTTLEYLGRLLSLQVQVKEAADVAAFRQSLREHHARVALAAAHSLSPHDTLSDPALDLLGLMRAGGLILRFEGRWQTLGEVPPAPAVDALLAWLETQPGALVQTDALGQLWPAGADLAPSAAGLLAISVGEGWSECLVWLRPELRLEVAWGGATPDQAKDDLGPRHSFDTYLEEKRGYAEPWHPGEIEEAQDLRDTLTGALGERLSVIRDLNRALTQSNAEWRQYGFVISHHMQEPVRLISQFAELLTRQPRAQDGSPDSPQTERITGFLLRETSRLRSLTQDLHTYTALLSAPPPVRRPTPLGRVVDDVLQDLEPRIADTGASIEVAPELPVIAADAGLLRDLLLHLIGNALTFGGPEPRIAVRTERQGAGWSIAVSDQGAGIAPEYQERIFLLFQRLGSLDEALGNGLGLPLCRKIAELHGGTLTVESAPGEGSTFRCWLPDAGPLPGAADA

Comments

Domain	Bacteria
Family	Deinococcaceae
Species (Full Name)	Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Gene	bphP DR_A0050
PFAM codes	PF00360, PF01590, PF02518, PF08446
InterPro codes	IPR003018, IPR003594, IPR004358, IPR005467, IPR013515, IPR013654, IPR016132, IPR029016, IPR035965, IPR036097, IPR036890, IPR043150
PDB structures (whole Protein)	1ZTU A: 1-321 2O9B A: 1-321 2O9C A: 1-321 3S7N A: 1-321 3S7O A: 1-321 3S7P A: 1-321 3S7Q A: 1-321 4CQH A: 1-317 4IJG A: 7-321 4O01 A/B/C/D: 1-502 4O0P A/B: 1-502 4O8G A: 1-321 4Q0H A: 1-321 4Q0I A: 1-321 4Q0J A: 1-502 4Y3I A: 4-321 4Y5F A: 4-321 4Z1W A: 1-321 4ZRR A: 1-321 5AJG A: 1-321 5C5K A/B/C/D: 1-502 5K5B A: 1-321 5L8M A: 1-321 5LBR A: 1-321 5MG0 A: 1-321 5MG1 A: 1-502 5NFX A: 1-321 5NM3 A/B/C/D: 1-502 5NWN A/B/C/D: 1-502 6FHT A/B: 3-510 6FTD A/B: 1-321 6T3L A/B: 1-321 6T3U A/B: 1-321 7Z9D A: 1-321 7Z9E A: 1-321

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Q9RZA4F1

AF4

Model Sequence