| Protein name |
Ubiquitin carboxyl-terminal hydrolase isozyme L5
|
| Main knot |
52 (80%)
|
| Global pLDDT |
89.97
|
| Species |
Human
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 Q9Y5K5
|
| PDB structures | |
| Structures in KnotProt |
 3A7S A, K -5.2, -3.1, -3.1: 1-228 3IHR A, K -5.2, -3.1, -3.1: 1-329 3RII A/B, K -5.2, -3.1, -3.1: 1-228 3RIS A/B/C/D, K -5.2, -3.1, -3.1: 1-240 3TB3 A/B, S -3.1, -3.1: 1-227 4UEL A, K -5.2, -3.1, -3.1: 1-329 4UEM A, K -5.2, -3.1, -3.1: 1-329 4UF5 A, K -5.2, -3.1, -3.1: 1-329 4UF6 A/D/G/J, K -5.2, -3.1, -3.1: 1-329 4WLP A, K -5.2, -3.1, -3.1: 5-322
|
| Model length |
329
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
90.7 | 9-221 | 213 | 1-8, 222-329 |
|
Model Sequence |
MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK
|
| Protein name |
Ubiquitin carboxyl-terminal hydrolase isozyme L5
|
| Main knot |
52 (82%)
|
| Knot fingerprint |
K 52 31 31
|
| Global pLDDT |
89.9
|
| Species |
Human
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v1:
Q9Y5K5
|
| PDB structures | |
| Structures in KnotProt |
3A7S A, K -5.2, -3.1, -3.1: 1-228 3IHR A, K -5.2, -3.1, -3.1: 1-329 3RII A/B, K -5.2, -3.1, -3.1: 1-228 3RIS A/B/C/D, K -5.2, -3.1, -3.1: 1-240 3TB3 A/B, S -3.1, -3.1: 1-227 4UEL A, K -5.2, -3.1, -3.1: 1-329 4UEM A, K -5.2, -3.1, -3.1: 1-329 4UF5 A, K -5.2, -3.1, -3.1: 1-329 4UF6 A/D/G/J, K -5.2, -3.1, -3.1: 1-329 4WLP A, K -5.2, -3.1, -3.1: 5-322
|
| Model length |
329
|
| AlphaFold deposition date |
2021-07-01
|
| AlphaKnot deposition date |
2021-12-18
|
Knot cutoff: 48%
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
90.9 | 10-224 | 215 | 1-9, 225-329 |
|
||||||
 |
90.0 | 9-165 | 157 | 1-8, 166-329 |
Model Sequence |
MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK
|
| Protein name |
Ubiquitin carboxyl-terminal hydrolase isozyme L5
|
| Main knot |
52 (81%)
|
| Global pLDDT |
87.94
|
| Species |
Human
|
| UniProt | |
| Structure Prediction Model |
ESM v1: esmfold_v1 - nov. 2022
|
| PDB structures | |
| Structures in KnotProt |
3A7S A, K -5.2, -3.1, -3.1: 1-228 3IHR A, K -5.2, -3.1, -3.1: 1-329 3RII A/B, K -5.2, -3.1, -3.1: 1-228 3RIS A/B/C/D, K -5.2, -3.1, -3.1: 1-240 3TB3 A/B, S -3.1, -3.1: 1-227 4UEL A, K -5.2, -3.1, -3.1: 1-329 4UEM A, K -5.2, -3.1, -3.1: 1-329 4UF5 A, K -5.2, -3.1, -3.1: 1-329 4UF6 A/D/G/J, K -5.2, -3.1, -3.1: 1-329 4WLP A, K -5.2, -3.1, -3.1: 5-322
|
| Model length |
329
|
| ESM generation time |
2023-06-26: download the generated 3D model
|
| AlphaKnot deposition date |
2023-06-28
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
86.2 | 10-221 | 212 | 1-9, 222-329 |
|
Model Sequence |
MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK
|
| Domain |
Eukaryota
|
| Family |
Hominidae
|
| Species (Full Name) |
Homo sapiens
|
| PFAM codes |
PF01088, PF18031
|
| InterPro codes |
 IPR001578, IPR017390, IPR033837, IPR036959, IPR038765, IPR041507
|
| PDB structures (whole Protein) |
 3A7S A: 1-228 3IHR A: 1-329 3RII A/B: 1-228 3RIS A/B/C/D: 1-240 3TB3 A/B: 1-227 4UEL A: 1-329 4UEM A: 1-329 4UF5 A: 1-329 4UF6 A/D/G/J: 1-329 4WLP A: 5-322
|
#similar chains with experimentally solved models (PDB) in the AlphaKnot 2.0 database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains with experimentally solved models not found in AlphaKnot 2.0 database but found in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
Q9Y5K5