R6PVJ1F1

Oligopeptide transporter, OPT family
AF4
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Information
Protein name
Oligopeptide transporter, OPT family
Main knot
52 (60%)
Global pLDDT
87.89
Species
Clostridium nexile
UniProt
Structure Prediction Model
AlphaFold v4:  R6PVJ1
PDB structures
-
Model length
634
AlphaFold deposition date
2022-06-01
AlphaKnot deposition date
2023-01-27
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Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
89.0 51-531 481 1-50, 532-634 50 103
Model Sequence
MDNKKDFKPFISADKIVPEFTFTSLFIGILLAVVFGAANAYLGLRVGMTVSASIPAAVLSMGIIRVILRRDSILENNMVQTIGSAGESVAAGAIFTLPALFLWAADGVEGIEAPGLFEIFLIALVGGTLGVLFMIPLRKALIVEEHGVLPYPEGTACAEVLLAGEEGGSKASVVFSGLGIAAVYKFVADGLGVFPSSVNYDIKAYKGSAVGMDVLPALVGVGYICGPRIASYMFSGSVLSWFVLMPLISLFAGDAIIFPGTKPISSLAPSELWGTYIKYIGAGAVATGGIISLIKSLPLIVKTFSQAMKSMSNNKGKAASGLRTDQDMPMPVILIGVGVIAIAIWLLPTFPINLLGAVIVVIFGFFFATVSSRMVGLIGSSNNPVSGMAIATLLIATILLKATGLDGATGMKGAIAIGSIICIVAAIAGDTSQDLKTGFIVGATPKKQQWGELIGVLTSSLAIGGVLYLLNEAWGYGSTELPAAQATMMRMIVEGVMNADLPWGLIGAGAAIAIVVEILRIPVLPFAVGMYLPLSLNAGIMAGGLVRLVVEKKRGLSEEKKKAAIDRGILYTSGMIAGEGLVGILLAVFAVVELDLTKLLGGFSLGQIGAILIFLVVVIGSLFKVTLFSKENKN
Comments
Domain Bacteria
Family Clostridiaceae
Species (Full Name) Clostridium nexile CAG:348
Gene BN618_00216
PFAM codes  PF03169
InterPro codes  IPR004813,  IPR004814,  IPR045035
PDB structures (whole Protein) -
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