R6YKD9 | AlphaKnot 2.0

AF6

Categories voted by users:

Information

Protein name	Type I restriction endonuclease subunit R
Main knot	8₃ (50%)
Global pLDDT	90.76
Species	Roseburia sp
UniProt	R6YKD9
Structure Prediction Model	AlphaFold v6: R6YKD9
PDB structures	-
Model length	466
AlphaFold deposition date	2026-06-01
AlphaKnot deposition date	2026-07-09

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					91.41	29-450	422	1-28, 451-466	28	16		Knot

Model Sequence

MNQIRKIIKDLDKGVAPRKNLPIYANYLADTYLNYASIELVFSAYMLVETCQEGIDLSEEEERRYDEVRREIPHVYEENVEAQNACIERLDHIRGEITQVMEKYTSYTDQLICYDYVLKHRKFDFEEEEPYQKDVFATEEDVFVKELMAFLVGNKDQSIVKERLQQLMGMIPVHMTKQRLMGKIQDTGSLYIGGDMVSLDNFIYMIRSAAMLQKAGTETEEDAIAELLKELQNTDFAGLTKESFESMSKELEKAGEYILRVTDFYYQLQKVVNAMYALSLANCHKREESALYEHCREVLMQVAEGSLNEEGLVKLEGKIETYVEKSSYLEAVLFEIKSSHKKIIEELGKGEEFDAFAKIANLLSDSLFIDMERFGENDTVEAAAEAEKIKELTGELSDFLSTLSKPLKKAVMAEVLEKLPVEFTNAGEIETYIRTNLFGCQNEAEKKAAMMELREWMDEAAEWRSE

Comments

AF4

Categories voted by users:

Information

Protein name	Type I restriction endonuclease subunit R
Main knot	8₃ (52%)
Global pLDDT	90.78
Species	Roseburia sp
UniProt	R6YKD9
Structure Prediction Model	AlphaFold v4: R6YKD9
PDB structures	-
Model length	466
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					91.4	35-452	418	1-34, 453-466	34	14

Model Sequence

Comments

Domain	Bacteria
Family	Lachnospiraceae
Species (Full Name)	Roseburia sp. CAG:309
Gene	BN600_00693
PDB structures (whole Protein)	-

R6YKD9F1

AF6

Model Sequence

AF4

Model Sequence