S2Y0S4 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	YqhG
Main knot	3₁ (61%)
Global pLDDT	85.86
Species	Paenisporosarcina sp
UniProt	S2Y0S4
Structure Prediction Model	AlphaFold v4: S2Y0S4
PDB structures	-
Model length	261
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					84.0	103-260	158	1-102, 261-261	102	1

Model Sequence

MYPQQIHEYLVRFFKENNCQIVKEHDHYITVQLTIDMDKKIMNRPYYWQYIENTNIVPSPAQITLITDQNKLEEDIKGEVVHFGSPWLNHIFQATNDLGSFVHMYERVSGNPGSQPILTPWLGVNYKVSYYSDQTKEMLYSLGINLMTGEMKHSFQEEISELDLDSTMPKNAFDLMYIIKPIRGLERLDAAIESLIQHDDHTWADEAKSRWQKDRQVLEHFYEAMDNKPECYEMEKKAMDEQYQTRINIDVVNGGLFYMQS

Comments

ESM1

Categories voted by users:

Information

Protein name	YqhG
Main knot	3₁ (58%)
Global pLDDT	92.35
Species	Paenisporosarcina sp
UniProt	S2Y0S4
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	261
ESM generation time	2023-06-25: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					93.4	103-260	158	1-102, 261-261	102	1

Model Sequence

Comments

Domain	Bacteria
Family	Planococcaceae
Species (Full Name)	Paenisporosarcina sp. HGH0030
Gene	HMPREF1210_02163
PFAM codes	PF11079
InterPro codes	IPR024562
PDB structures (whole Protein)	-

S2Y0S4F1

AF4

Model Sequence

ESM1

Model Sequence