S8DYQ9 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (49%)
Global pLDDT	89.23
Species	strain FP-58527
UniProt	S8DYQ9
Structure Prediction Model	AlphaFold v4: S8DYQ9
PDB structures	-
Model length	322
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					90.0	11-222	212	1-10, 223-322	10	100

Model Sequence

MSAEDEQSGWQLTESDPGVFTELLKTLAVPLIVDDLYSLDSASLLEMQPIHAFIFLFKWVGSSAEPTAGQYDPEFPGFFAHQVVNNACATLAVMNAIGNIPGLPMGTQLSDLVNFTTGMDPQTRGMAITSSDWLREAHNALSPPSAISLDGLGLPKTAEDAYHFIVYMPYMGCVYEFDGLRQYPVNHGPFPEGGEGWVAKARDVIEARIATYPAGALEFSLLALHEDPVSRLEAQISGLQAAGRQAEAGDLIVRLSTENAKRERWNFENSLRRHNYVGLIHALLVALAKAGRLAAAKEGAKKALQERIEKRKERGEASMEED

Comments

ESM1

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (76%)
Global pLDDT	89.44
Species	strain FP-58527
UniProt	S8DYQ9
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	322
ESM generation time	2023-06-25: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					86.2	12-222	211	1-11, 223-322	11	100

Model Sequence

Comments

Domain	Eukaryota
Family	Fomitopsidaceae
Species (Full Name)	Fomitopsis pinicola (strain FP-58527) (Brown rot fungus)
Gene	FOMPIDRAFT_1038210
PFAM codes	PF01088, PF18031
InterPro codes	IPR001578, IPR036959, IPR038765, IPR041507
PDB structures (whole Protein)	-

S8DYQ9F1

AF4

Model Sequence

ESM1

Model Sequence