U3JWK3 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	S-adenosylmethionine synthase (EC 2.5.1.6)
Main knot	3₁ (76%)
Global pLDDT	96.54
Species	Collared flycatcher
UniProt	U3JWK3
Structure Prediction Model	AlphaFold v4: U3JWK3
PDB structures	-
Model length	396
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					98.4	25-284	260	1-24, 285-396	24	112

Model Sequence

MNGPVDGLCDYTLDDEGAFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSRAIVDYQRVVRDAIRHIGYDDSAKGFDYKTCNVLVALEQQSPDIAQGVHLHRNEEDVGAGDQGLMFGYATDETEECMPLTIILAHKLNARLAELRRSGELPWLRPDSKTQVTVQYIQKNGAVVPVRVHTIVISVQHDESISLENMRRTLKERVIQVVVPAKYLDDKTVYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYAIGVAHPLSISLFTYGTSQKTEKELLDIVHKNFDLRPGVIVRDLDLKKPIYQKTACYGHFGRQEFSWEVPKKLVF

Comments

ESM1

Categories voted by users:

Information

Protein name	S-adenosylmethionine synthase (EC 2.5.1.6)
Main knot	3₁ (75%)
Global pLDDT	82.19
Species	Collared flycatcher
UniProt	U3JWK3
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	396
ESM generation time	2023-06-23: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					68.2	27-287	261	1-26, 288-396	26	109

Model Sequence

Comments

Domain	Eukaryota
Family	Muscicapidae
Species (Full Name)	Ficedula albicollis (Collared flycatcher) (Muscicapa albicollis)
Gene	MAT1A
PFAM codes	PF00438, PF02772, PF02773
InterPro codes	IPR002133, IPR022628, IPR022629, IPR022630, IPR022631, IPR022636
PDB structures (whole Protein)	-

U3JWK3F1

AF4

Model Sequence

ESM1

Model Sequence