U4E716 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Plasmid-related protein
Main knot	3₁ (76%)
Global pLDDT	90.01
Species	Vibrio nigripulchritudo
UniProt	U4E716
Structure Prediction Model	AlphaFold v4: U4E716
PDB structures	-
Model length	200
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					95.2	20-120	101	1-19, 121-200	19	80

Model Sequence

MAQAKPNYSKPIFEQSFTINSLQAQRVVDRVFRRTVSALYGIDVILRIIGDENEIDEVEQIISQLIEDCAKAVDNEQSRLDKLMESNGIDEVPDYTDPITFNAKISSPQVGQFVGLVRKLDSLMISMDTLWLSSVLSNKQRVDGNYAWQQRIIKLARRIIDIEIRARKSAQAKGKEAEVEQAVPSTDDDITEEETDTPAN

Comments

ESM1

Categories voted by users:

Information

Protein name	Plasmid-related protein
Main knot	3₁ (84%)
Global pLDDT	90.67
Species	Vibrio nigripulchritudo
UniProt	U4E716
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	200
ESM generation time	2023-06-24: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					77.6	20-120	101	1-19, 121-200	19	80

Model Sequence

Comments

Domain	Bacteria
Family	Vibrionaceae
Species (Full Name)	Vibrio nigripulchritudo FTn2
Gene	VIBNIFTn2_490111
PDB structures (whole Protein)	-

U4E716F1

AF4

Model Sequence

ESM1

Model Sequence