V9KJQ1 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Transporter
Main knot	4₁ (92%)
Global pLDDT	81.84
Species	Ghost shark
UniProt	V9KJQ1
Structure Prediction Model	AlphaFold v4: V9KJQ1
PDB structures	-
Structure in AlphaLasso	V9KJQ1: L₀
Model length	383
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					89.4	48-333	286	1-47, 334-383	47	50

Model Sequence

MDSKTPEVKRGGTDSKQDYLCQKAEVLEREQWQNKMEYALSVAGEIIGLGNVWRFPYLCYKNGGGAFLIPYVIFLIICGIPMFFLETSLGQYTREGGITSWRKICPLFEGIGYGSQVIVLYQIVYYILILAWAFFYLFSCFSAELPWANCKHEWNSDTCVAFTKNSSVSNLTSAINITSPVVEFWEKRVLNLSDGIEHLGTIKWELALCLLLSWTVCYFCIWKGVKGTGKVVYFTATFPYVMLTILLIRGLTLPGAVEGIKYYLYPDMSKLADPQVWMEAGTQIFFSYALCIGCLTALGSYNNFNNNTYRDCFLMSALNSGTSFLSGFAIFSVLGFMAYEEKVHISEVAEAGREYSLFSHFKLYAVHFGRGDSVEIGSPLLNN

Comments

ESM1

Categories voted by users:

Information

Protein name	Transporter
Main knot	4₁ (84%)
Global pLDDT	83.77
Species	Ghost shark
UniProt	V9KJQ1
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Structure in AlphaLasso	V9KJQ1: L₀
Model length	383
ESM generation time	2023-06-23: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					76.7	49-333	285	1-48, 334-383	48	50

Model Sequence

Comments

Domain	Eukaryota
Family	Callorhinchidae
Species (Full Name)	Callorhinchus milii (Ghost shark)
PFAM codes	PF00209
InterPro codes	IPR000175, IPR037272
PDB structures (whole Protein)	-

V9KJQ1F1

AF4

Model Sequence

ESM1

Model Sequence